Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   H0501_RS08840 Genome accession   NZ_LR822008
Coordinates   1716681..1717781 (-) Length   366 a.a.
NCBI ID   WP_120764773.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_18     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1711681..1722781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0501_RS10185 (STHERMO_1965) - 1712006..1712281 (-) 276 WP_232086463.1 CAAX protease -
  H0501_RS08800 (STHERMO_1966) - 1712293..1712490 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  H0501_RS08805 (STHERMO_1967) - 1712739..1713932 (-) 1194 WP_179970807.1 acetate kinase -
  H0501_RS08810 (STHERMO_1968) comYH 1713988..1714944 (-) 957 WP_084831205.1 class I SAM-dependent methyltransferase Machinery gene
  H0501_RS08815 (STHERMO_1969) comGG 1714989..1715306 (-) 318 WP_082309152.1 competence type IV pilus minor pilin ComGG -
  H0501_RS08820 (STHERMO_1970) comYF 1715284..1715721 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  H0501_RS08825 (STHERMO_1971) comGE 1715705..1715998 (-) 294 WP_082309154.1 competence type IV pilus minor pilin ComGE -
  H0501_RS08830 (STHERMO_1972) comGD 1715970..1716398 (-) 429 WP_253269448.1 competence type IV pilus minor pilin ComGD -
  H0501_RS08835 (STHERMO_1973) comYC 1716358..1716684 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H0501_RS08840 (STHERMO_1974) comYB 1716681..1717781 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  H0501_RS08845 (STHERMO_1975) comGA/cglA/cilD 1717663..1718604 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  H0501_RS08850 (STHERMO_1976) - 1718685..1719047 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41876.03 Da        Isoelectric Point: 10.1377

>NTDB_id=1130524 H0501_RS08840 WP_120764773.1 1716681..1717781(-) (comYB) [Streptococcus thermophilus isolate STH_CIRM_18]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKETSLSLM
KESLIRGDRLYQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=1130524 H0501_RS08840 WP_120764773.1 1716681..1717781(-) (comYB) [Streptococcus thermophilus isolate STH_CIRM_18]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAACATCCTTGTCCCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGTATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.678

93.443

0.511
  comYB Streptococcus mutans UA159

54.678

93.443

0.511
  comYB Streptococcus gordonii str. Challis substr. CH1

51.17

93.443

0.478
  comGB/cglB Streptococcus mitis NCTC 12261

50.453

90.437

0.456
  comGB/cglB Streptococcus mitis SK321

49.697

90.164

0.448
  comGB/cglB Streptococcus pneumoniae Rx1

49.695

89.617

0.445
  comGB/cglB Streptococcus pneumoniae D39

49.695

89.617

0.445
  comGB/cglB Streptococcus pneumoniae R6

49.695

89.617

0.445
  comGB/cglB Streptococcus pneumoniae TIGR4

49.695

89.617

0.445
  comGB Lactococcus lactis subsp. cremoris KW2

45.758

90.164

0.413

Multiple sequence alignment