Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   H0501_RS08810 Genome accession   NZ_LR822008
Coordinates   1713988..1714944 (-) Length   318 a.a.
NCBI ID   WP_084831205.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_18     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1708988..1719944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0501_RS08780 (STHERMO_1961) proC 1709548..1710318 (+) 771 WP_179970808.1 pyrroline-5-carboxylate reductase -
  H0501_RS08785 (STHERMO_1962) - 1710348..1711010 (-) 663 WP_011227583.1 CPBP family intramembrane glutamic endopeptidase -
  H0501_RS08790 (STHERMO_1963) - 1711107..1711550 (-) 444 WP_084829882.1 CAAX protease -
  H0501_RS10180 (STHERMO_1964) - 1711624..1711962 (-) 339 WP_232086462.1 CPBP family intramembrane glutamic endopeptidase -
  H0501_RS10185 (STHERMO_1965) - 1712006..1712281 (-) 276 WP_232086463.1 CAAX protease -
  H0501_RS08800 (STHERMO_1966) - 1712293..1712490 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  H0501_RS08805 (STHERMO_1967) - 1712739..1713932 (-) 1194 WP_179970807.1 acetate kinase -
  H0501_RS08810 (STHERMO_1968) comYH 1713988..1714944 (-) 957 WP_084831205.1 class I SAM-dependent methyltransferase Machinery gene
  H0501_RS08815 (STHERMO_1969) comGG 1714989..1715306 (-) 318 WP_082309152.1 competence type IV pilus minor pilin ComGG -
  H0501_RS08820 (STHERMO_1970) comYF 1715284..1715721 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  H0501_RS08825 (STHERMO_1971) comGE 1715705..1715998 (-) 294 WP_082309154.1 competence type IV pilus minor pilin ComGE -
  H0501_RS08830 (STHERMO_1972) comGD 1715970..1716398 (-) 429 WP_253269448.1 competence type IV pilus minor pilin ComGD -
  H0501_RS08835 (STHERMO_1973) comYC 1716358..1716684 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H0501_RS08840 (STHERMO_1974) comYB 1716681..1717781 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  H0501_RS08845 (STHERMO_1975) comGA/cglA/cilD 1717663..1718604 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  H0501_RS08850 (STHERMO_1976) - 1718685..1719047 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35871.03 Da        Isoelectric Point: 4.7123

>NTDB_id=1130521 H0501_RS08810 WP_084831205.1 1713988..1714944(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_18]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
VVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1130521 H0501_RS08810 WP_084831205.1 1713988..1714944(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_18]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GTGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTTTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

69.524

99.057

0.689
  comYH Streptococcus mutans UA140

69.524

99.057

0.689

Multiple sequence alignment