Detailed information NTG0112946

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: BAMY6639_RS03005
• Genome accession: NZ_CP006058
• Coordinates: 670874..671311 (-)
• Length: 145 a.a.
• NCBI ID: WP_012117983.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens UMAF6639
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 665874..676311

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY6639_RS02955 (BAMY6639_03120)	sinI	666258..666431 (+)	174	WP_003153105.1	anti-repressor SinI	Regulator
BAMY6639_RS02960 (BAMY6639_03125)	sinR	666465..666800 (+)	336	WP_003153104.1	transcriptional regulator SinR	Regulator
BAMY6639_RS02965 (BAMY6639_03130)	tasA	666848..667633 (-)	786	WP_007408329.1	biofilm matrix protein TasA	-
BAMY6639_RS02970 (BAMY6639_03135)	sipW	667698..668282 (-)	585	WP_061860711.1	signal peptidase I SipW	-
BAMY6639_RS02975 (BAMY6639_03140)	tapA	668254..668925 (-)	672	WP_060674605.1	amyloid fiber anchoring/assembly protein TapA	-
BAMY6639_RS02980 (BAMY6639_03145)	-	669184..669513 (+)	330	WP_060674607.1	DUF3889 domain-containing protein	-
BAMY6639_RS02985 (BAMY6639_03150)	-	669553..669732 (-)	180	WP_003153093.1	YqzE family protein	-
BAMY6639_RS02990 (BAMY6639_03155)	comGG	669789..670166 (-)	378	WP_015417814.1	competence type IV pilus minor pilin ComGG	Machinery gene
BAMY6639_RS02995 (BAMY6639_03160)	comGF	670167..670562 (-)	396	WP_060674609.1	competence type IV pilus minor pilin ComGF	-
BAMY6639_RS03000 (BAMY6639_03165)	comGE	670576..670890 (-)	315	WP_060674611.1	competence type IV pilus minor pilin ComGE	-
BAMY6639_RS03005 (BAMY6639_03170)	comGD	670874..671311 (-)	438	WP_012117983.1	competence type IV pilus minor pilin ComGD	Machinery gene
BAMY6639_RS03010 (BAMY6639_03175)	comGC	671301..671567 (-)	267	WP_060674857.1	competence type IV pilus major pilin ComGC	Machinery gene
BAMY6639_RS03015 (BAMY6639_03180)	comGB	671614..672651 (-)	1038	WP_060674612.1	competence type IV pilus assembly protein ComGB	Machinery gene
BAMY6639_RS03020 (BAMY6639_03185)	comGA	672638..673708 (-)	1071	WP_060674614.1	competence type IV pilus ATPase ComGA	Machinery gene
BAMY6639_RS03025 (BAMY6639_03190)	-	673901..674851 (-)	951	WP_015417820.1	magnesium transporter CorA family protein	-
BAMY6639_RS03030 (BAMY6639_03195)	-	674997..676298 (+)	1302	WP_012117986.1	hemolysin family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16286.74 Da
• Isoelectric Point: 10.2475

>NTDB_id=112946 BAMY6639_RS03005 WP_012117983.1 670874..671311(-) (comGD) [Bacillus amyloliquefaciens UMAF6639]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPAYTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide

• Length: 438 bp

>NTDB_id=112946 BAMY6639_RS03005 WP_012117983.1 670874..671311(-) (comGD) [Bacillus amyloliquefaciens UMAF6639]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGTCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGCCTACACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAGATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCCTTTGATTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGAAAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Bacillus subtilis subsp. subtilis str. 168	56.849	100	0.572