Detailed information NTG0112949

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: NF38_RS00200
• Genome accession: NZ_CP009610
• Coordinates: 43072..43737 (+)
• Length: 221 a.a.
• NCBI ID: WP_013526173.1
• Uniprot ID: Q4QLV5
• Organism: Haemophilus influenzae strain Hi375
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 38072..48737

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF38_RS00170 (NF38_00170)	rlmC	38072..39247 (+)	1176	WP_021034785.1	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	-
NF38_RS00175 (NF38_00175)	crp	39612..40286 (-)	675	WP_005647998.1	cAMP-activated global transcriptional regulator CRP	Regulator
NF38_RS00180 (NF38_00180)	-	40271..40522 (-)	252	WP_005647999.1	YheU family protein	-
NF38_RS00185 (NF38_00185)	slmA	40544..41200 (-)	657	WP_005648000.1	nucleoid occlusion factor SlmA	-
NF38_RS00190 (NF38_00190)	dut	41204..41659 (-)	456	WP_005631431.1	dUTP diphosphatase	-
NF38_RS00195 (NF38_00195)	coaBC	41707..42909 (-)	1203	WP_011272308.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
NF38_RS00200 (NF38_00200)	radC	43072..43737 (+)	666	WP_013526173.1	DNA repair protein RadC	Machinery gene
NF38_RS00205 (NF38_00205)	rpmB	43951..44187 (+)	237	WP_005542826.1	50S ribosomal protein L28	-
NF38_RS00210 (NF38_00210)	rpmG	44199..44369 (+)	171	WP_005613503.1	50S ribosomal protein L33	-
NF38_RS00215 (NF38_00215)	-	44716..46080 (+)	1365	WP_005651563.1	diaminobutyrate--2-oxoglutarate transaminase	-
NF38_RS00220 (NF38_00220)	vapB2	46227..46460 (+)	234	WP_005648011.1	type II toxin-antitoxin system antitoxin VapB2	-
NF38_RS00225 (NF38_00225)	vapC	46460..46858 (+)	399	WP_005651560.1	tRNA(fMet)-specific endonuclease VapC	-
NF38_RS00230 (NF38_00230)	ddc	46878..48413 (+)	1536	WP_011272306.1	L-2,4-diaminobutyrate decarboxylase	-

Sequence

Protein

• Length: 221 a.a.
• Molecular weight: 25057.34 Da
• Isoelectric Point: 6.3797

>NTDB_id=112949 NF38_RS00200 WP_013526173.1 43072..43737(+) (radC) [Haemophilus influenzae strain Hi375]
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKDCPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQEMLSTPIINDLETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Nucleotide

• Length: 666 bp

>NTDB_id=112949 NF38_RS00200 WP_013526173.1 43072..43737(+) (radC) [Haemophilus influenzae strain Hi375]
ATGGAAAACAATGATGAATTAATGCCACGGGAAAAATTGCTGGCATTCGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGTACTGGTATCAAAGATTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT
TGCACGCTTTACTTTCCGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA
GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGAGATGTTAAGTACGCCGATTATTAATGATCTTGAAACGGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAGGAAAGAGAAGTATTTATGGTTTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCGCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAACTTATTAC
TAAAAAAATTCAAGATGCGGCTGAACTAATGGAAATTCGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCGGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (102-218)

• UPF0758 N-terminal (UPF0758_N) (8-74)

3D structure

• AlphaFold DB: Q4QLV5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	97.738	100	0.977
radC	Streptococcus pneumoniae TIGR4	38.14	97.285	0.371
radC	Streptococcus pneumoniae R6	37.674	97.285	0.367
radC	Streptococcus pneumoniae D39	37.674	97.285	0.367