Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | BAMY6639_RS03015 | Genome accession | NZ_CP006058 |
| Coordinates | 671614..672651 (-) | Length | 345 a.a. |
| NCBI ID | WP_060674612.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens UMAF6639 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 666614..677651
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAMY6639_RS02965 (BAMY6639_03130) | tasA | 666848..667633 (-) | 786 | WP_007408329.1 | biofilm matrix protein TasA | - |
| BAMY6639_RS02970 (BAMY6639_03135) | sipW | 667698..668282 (-) | 585 | WP_061860711.1 | signal peptidase I SipW | - |
| BAMY6639_RS02975 (BAMY6639_03140) | tapA | 668254..668925 (-) | 672 | WP_060674605.1 | amyloid fiber anchoring/assembly protein TapA | - |
| BAMY6639_RS02980 (BAMY6639_03145) | - | 669184..669513 (+) | 330 | WP_060674607.1 | DUF3889 domain-containing protein | - |
| BAMY6639_RS02985 (BAMY6639_03150) | - | 669553..669732 (-) | 180 | WP_003153093.1 | YqzE family protein | - |
| BAMY6639_RS02990 (BAMY6639_03155) | comGG | 669789..670166 (-) | 378 | WP_015417814.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| BAMY6639_RS02995 (BAMY6639_03160) | comGF | 670167..670562 (-) | 396 | WP_060674609.1 | competence type IV pilus minor pilin ComGF | - |
| BAMY6639_RS03000 (BAMY6639_03165) | comGE | 670576..670890 (-) | 315 | WP_060674611.1 | competence type IV pilus minor pilin ComGE | - |
| BAMY6639_RS03005 (BAMY6639_03170) | comGD | 670874..671311 (-) | 438 | WP_012117983.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| BAMY6639_RS03010 (BAMY6639_03175) | comGC | 671301..671567 (-) | 267 | WP_060674857.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| BAMY6639_RS03015 (BAMY6639_03180) | comGB | 671614..672651 (-) | 1038 | WP_060674612.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| BAMY6639_RS03020 (BAMY6639_03185) | comGA | 672638..673708 (-) | 1071 | WP_060674614.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| BAMY6639_RS03025 (BAMY6639_03190) | - | 673901..674851 (-) | 951 | WP_015417820.1 | magnesium transporter CorA family protein | - |
| BAMY6639_RS03030 (BAMY6639_03195) | - | 674997..676298 (+) | 1302 | WP_012117986.1 | hemolysin family protein | - |
| BAMY6639_RS03035 (BAMY6639_03200) | - | 676336..677166 (-) | 831 | WP_039254482.1 | STAS domain-containing protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39659.04 Da Isoelectric Point: 9.5935
>NTDB_id=112948 BAMY6639_RS03015 WP_060674612.1 671614..672651(-) (comGB) [Bacillus amyloliquefaciens UMAF6639]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLQLQLHKRQLAELKEGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLIFSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLQLQLHKRQLAELKEGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLIFSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=112948 BAMY6639_RS03015 WP_060674612.1 671614..672651(-) (comGB) [Bacillus amyloliquefaciens UMAF6639]
ATGAAGCGGATTAAACGAACATGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
TTACAGTCTGATTGAAGGGCTCAGACTGCTGCAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGAAGGAAGGAATCC
GCCGGCTGAGAGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTTTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACGTCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTTTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCACTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCGATCTATGACAGCTTAACAGCTTTTAAAGAGCAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
ATGAAGCGGATTAAACGAACATGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
TTACAGTCTGATTGAAGGGCTCAGACTGCTGCAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGAAGGAAGGAATCC
GCCGGCTGAGAGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTTTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACGTCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTTTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCACTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCGATCTATGACAGCTTAACAGCTTTTAAAGAGCAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
65.635 |
93.623 |
0.614 |