Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BAMY6639_RS02960 Genome accession   NZ_CP006058
Coordinates   666465..666800 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 661465..671800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS02940 (BAMY6639_03105) gcvT 662071..663171 (-) 1101 WP_061860709.1 glycine cleavage system aminomethyltransferase GcvT -
  BAMY6639_RS02945 (BAMY6639_03110) - 663595..665265 (+) 1671 WP_031378948.1 DEAD/DEAH box helicase -
  BAMY6639_RS02950 (BAMY6639_03115) - 665287..666081 (+) 795 WP_061860710.1 YqhG family protein -
  BAMY6639_RS02955 (BAMY6639_03120) sinI 666258..666431 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  BAMY6639_RS02960 (BAMY6639_03125) sinR 666465..666800 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BAMY6639_RS02965 (BAMY6639_03130) tasA 666848..667633 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  BAMY6639_RS02970 (BAMY6639_03135) sipW 667698..668282 (-) 585 WP_061860711.1 signal peptidase I SipW -
  BAMY6639_RS02975 (BAMY6639_03140) tapA 668254..668925 (-) 672 WP_060674605.1 amyloid fiber anchoring/assembly protein TapA -
  BAMY6639_RS02980 (BAMY6639_03145) - 669184..669513 (+) 330 WP_060674607.1 DUF3889 domain-containing protein -
  BAMY6639_RS02985 (BAMY6639_03150) - 669553..669732 (-) 180 WP_003153093.1 YqzE family protein -
  BAMY6639_RS02990 (BAMY6639_03155) comGG 669789..670166 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  BAMY6639_RS02995 (BAMY6639_03160) comGF 670167..670562 (-) 396 WP_060674609.1 competence type IV pilus minor pilin ComGF -
  BAMY6639_RS03000 (BAMY6639_03165) comGE 670576..670890 (-) 315 WP_060674611.1 competence type IV pilus minor pilin ComGE -
  BAMY6639_RS03005 (BAMY6639_03170) comGD 670874..671311 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  BAMY6639_RS03010 (BAMY6639_03175) comGC 671301..671567 (-) 267 WP_060674857.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=112944 BAMY6639_RS02960 WP_003153104.1 666465..666800(+) (sinR) [Bacillus amyloliquefaciens UMAF6639]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=112944 BAMY6639_RS02960 WP_003153104.1 666465..666800(+) (sinR) [Bacillus amyloliquefaciens UMAF6639]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment