Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AQULUS_RS01675 Genome accession   NZ_LR699119
Coordinates   356607..358124 (+) Length   505 a.a.
NCBI ID   WP_148340244.1    Uniprot ID   -
Organism   Aquicella siphonis strain SGT-108     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 351607..363124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AQULUS_RS01650 (AQUSIP_03280) - 351625..354222 (-) 2598 WP_148338003.1 LPS-assembly protein LptD -
  AQULUS_RS01655 (AQUSIP_03290) - 354238..354429 (-) 192 WP_148338005.1 hypothetical protein -
  AQULUS_RS01660 (AQUSIP_03300) - 354482..355537 (+) 1056 WP_148338007.1 aminoglycoside phosphotransferase family protein -
  AQULUS_RS01665 (AQUSIP_03310) murU 355534..356208 (+) 675 WP_148338009.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  AQULUS_RS01675 (AQUSIP_03330) comM 356607..358124 (+) 1518 WP_148340244.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AQULUS_RS01680 (AQUSIP_03340) - 358264..358656 (+) 393 WP_148338011.1 hypothetical protein -
  AQULUS_RS01685 (AQUSIP_03350) - 358649..359347 (+) 699 WP_148338014.1 hypothetical protein -
  AQULUS_RS01690 (AQUSIP_03360) rpoH 359528..360394 (-) 867 WP_148340245.1 RNA polymerase sigma factor RpoH -
  AQULUS_RS01695 (AQUSIP_03370) pilA 360514..361560 (-) 1047 WP_148338016.1 signal recognition particle-docking protein FtsY Machinery gene
  AQULUS_RS01700 (AQUSIP_03380) rsmD 361830..362390 (+) 561 WP_148338018.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55074.41 Da        Isoelectric Point: 7.8540

>NTDB_id=1129296 AQULUS_RS01675 WP_148340244.1 356607..358124(+) (comM) [Aquicella siphonis strain SGT-108]
MALAIVYSRSSSGITAPLVTVEAHLAFGMAGFFIVGLPEAAVKESRDRVRSALVNSNFEFPSRRITVNLAPADLPKEGAG
FDLPIALGILAASGQIPRDRLEESEFTGELALSGDLRPVRGVLTMTLGAHHAGRRLIVPEVNAMEASLADQATVLSANHL
LQVCAYLKGEQNLPRSVRPRFDPENENTPDLAEVKGQPHAKRALEIAAAGRHSLLYIGPPGTGKTMLASRLPGILPPLQE
DEALEAAAVASLSHRGFNPLHWRRISFRSPHHSSSSAALVGGGRPPRPGEISLAHHGVLFLDELPEFNRQALECLREPLE
SGSITISRAAVQAVFPARFQLVAAMNPCPCGYAGSTQEFCQCDTEKIKRYLGKLSGPLLDRIDMQVEVTRPRPELLIKPG
SYPDETSAEVRGRVMYARQRQQQRQGKCNAMLTAGELDSYCLLDAQARDLLAQVMLRFGLSARVCHRLVKMARTIADLAD
MEVITLEHLGEALNYRCLDRSRMMI

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=1129296 AQULUS_RS01675 WP_148340244.1 356607..358124(+) (comM) [Aquicella siphonis strain SGT-108]
ATGGCTCTTGCAATTGTATATAGCCGGTCATCATCGGGCATTACCGCTCCTCTCGTTACGGTGGAAGCGCACCTGGCTTT
TGGAATGGCCGGATTTTTTATTGTCGGATTACCCGAGGCTGCGGTGAAGGAAAGCCGTGATCGCGTGCGCAGCGCGCTGG
TGAATTCGAATTTTGAATTTCCATCAAGACGGATTACGGTCAATCTTGCGCCGGCAGATTTACCTAAAGAAGGCGCAGGT
TTTGATTTGCCTATTGCGCTTGGCATTCTCGCCGCATCGGGACAAATTCCGCGGGACCGGCTGGAAGAATCCGAGTTTAC
AGGCGAATTGGCGTTATCAGGGGATTTGCGCCCGGTTCGCGGGGTGTTGACGATGACTCTGGGCGCGCACCATGCTGGCC
GCCGCCTGATCGTGCCCGAGGTAAACGCGATGGAAGCGTCATTAGCTGATCAGGCAACGGTGCTGTCAGCGAACCATTTG
CTGCAAGTCTGCGCTTATCTGAAGGGCGAACAGAATTTGCCTCGCAGCGTGCGCCCGCGTTTTGACCCGGAAAATGAAAA
TACTCCGGATCTTGCTGAAGTGAAAGGCCAGCCGCACGCCAAGCGTGCGCTTGAAATTGCGGCGGCGGGACGCCACAGTC
TGTTATATATCGGTCCTCCGGGTACCGGCAAGACCATGCTGGCCAGCAGGCTGCCAGGAATATTGCCGCCCCTGCAGGAA
GACGAAGCGTTGGAAGCGGCGGCGGTTGCTTCTCTCAGTCACCGCGGATTCAACCCCTTGCACTGGCGGCGGATTTCTTT
CAGGTCTCCTCATCACAGCAGTTCCAGCGCGGCGCTGGTGGGAGGCGGGCGACCGCCCCGTCCAGGTGAAATTTCACTGG
CTCATCACGGGGTTTTGTTTCTGGATGAGCTGCCTGAATTTAACCGGCAGGCGCTGGAGTGTTTGCGGGAACCTCTGGAA
TCAGGGTCTATCACCATATCGAGGGCGGCTGTCCAGGCAGTGTTTCCCGCCCGCTTTCAACTGGTGGCAGCCATGAATCC
TTGCCCTTGCGGGTATGCGGGCAGCACGCAGGAATTCTGCCAGTGTGATACGGAGAAAATCAAACGCTATCTTGGCAAGC
TTTCCGGTCCGCTGCTGGACCGCATTGACATGCAGGTCGAAGTGACGCGGCCCCGCCCGGAATTACTGATAAAGCCGGGT
TCTTATCCGGATGAAACCAGCGCGGAAGTCCGCGGCAGGGTGATGTACGCTCGCCAACGTCAACAACAACGGCAAGGTAA
ATGCAATGCGATGCTGACCGCGGGTGAGCTTGATTCTTATTGTCTGCTGGATGCGCAAGCCCGGGATTTGCTGGCGCAGG
TCATGCTGCGGTTCGGGTTATCCGCGCGCGTTTGTCATCGCCTGGTCAAGATGGCCCGCACGATCGCCGACCTGGCTGAC
ATGGAAGTCATTACGTTGGAACATCTGGGGGAAGCGTTGAATTATAGGTGCCTGGATAGGTCAAGAATGATGATTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.888

99.208

0.554
  comM Vibrio campbellii strain DS40M4

54.6

99.01

0.541
  comM Legionella pneumophila str. Paris

53.521

98.416

0.527
  comM Legionella pneumophila strain ERS1305867

53.521

98.416

0.527
  comM Haemophilus influenzae Rd KW20

52.063

100

0.525
  comM Glaesserella parasuis strain SC1401

52.381

99.802

0.523
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.922

100

0.444

Multiple sequence alignment