Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   FGL20_RS06505 Genome accession   NZ_LR594050
Coordinates   1324813..1325523 (-) Length   236 a.a.
NCBI ID   WP_003084933.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10925     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1319813..1330523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL20_RS06490 (NCTC10925_01307) rnc 1321852..1322544 (-) 693 WP_003085736.1 ribonuclease III -
  FGL20_RS06495 (NCTC10925_01308) vicX 1322649..1323461 (-) 813 WP_003084363.1 MBL fold metallo-hydrolase Regulator
  FGL20_RS06500 (NCTC10925_01309) vicK 1323462..1324820 (-) 1359 WP_003082933.1 cell wall metabolism sensor histidine kinase VicK Regulator
  FGL20_RS06505 (NCTC10925_01310) vicR 1324813..1325523 (-) 711 WP_003084933.1 response regulator YycF Regulator
  FGL20_RS06510 (NCTC10925_01311) - 1325784..1326563 (+) 780 WP_003083323.1 amino acid ABC transporter ATP-binding protein -
  FGL20_RS06515 (NCTC10925_01312) - 1326576..1327394 (+) 819 WP_003083506.1 transporter substrate-binding domain-containing protein -
  FGL20_RS06520 (NCTC10925_01313) - 1327412..1328116 (+) 705 WP_003085779.1 amino acid ABC transporter permease -
  FGL20_RS06525 (NCTC10925_01314) - 1328132..1328779 (+) 648 WP_093959102.1 amino acid ABC transporter permease -
  FGL20_RS06530 (NCTC10925_01315) - 1328831..1329856 (-) 1026 WP_003084434.1 DUF3114 domain-containing protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27172.12 Da        Isoelectric Point: 4.9981

>NTDB_id=1128048 FGL20_RS06505 WP_003084933.1 1324813..1325523(-) (vicR) [Streptococcus porcinus strain NCTC10925]
MKKILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAITIFEEDKPDLVILDLMLPEMDGLEVAKEIRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGNQELTIGNLQILPDAFLAKKYGKEVE
LTHREFELLHHLANHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKQHD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1128048 FGL20_RS06505 WP_003084933.1 1324813..1325523(-) (vicR) [Streptococcus porcinus strain NCTC10925]
ATGAAAAAAATCCTCATTGTAGACGATGAAAAACCTATTTCAGATATTATAAAGTTTAATTTGACCAAAGAAGGTTATGA
TATTATGACGGCTTTTGATGGCCGAGAAGCCATTACAATCTTCGAAGAAGATAAACCTGACTTGGTTATTTTGGATTTAA
TGTTACCAGAGATGGATGGTCTTGAAGTCGCAAAAGAAATCCGAAAAACCAGTCATATCCCTATTATCATGCTTTCTGCA
AAAGATAGTGAATTTGATAAGGTGATTGGTTTAGAAATCGGTGCGGATGATTACGTGACAAAACCTTTTTCAAATCGTGA
GCTCCTAGCGCGTGTTAAAGCTCATTTGCGACGTACTGAGACGATTGAAACAGCTGTTGCTGAAGAAAATGCTTCTTCAG
GAAATCAAGAATTAACTATCGGTAATCTCCAGATTCTACCAGATGCTTTCTTGGCTAAAAAATATGGCAAAGAAGTTGAA
CTGACACATCGCGAATTTGAATTATTACATCATTTAGCAAATCATATTGGGCAAGTTATGACCCGTGAACATTTATTAGA
AACCGTCTGGGGCTATGATTATTTTGGTGATGTGAGAACTGTTGATGTTACCGTACGACGTTTGAGAGAAAAAATAGAAG
ACACACCAAGCCGTCCTGAATATATTTTGACAAGACGTGGCGTTGGTTATTATATGAAACAGCATGACTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

87.712

100

0.877
  micA Streptococcus pneumoniae Cp1015

77.447

99.576

0.771
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.777

98.729

0.432
  covR Streptococcus salivarius strain HSISS4

42.735

99.153

0.424
  scnR Streptococcus mutans UA159

37.768

98.729

0.373

Multiple sequence alignment