Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   FGL23_RS05860 Genome accession   NZ_LR594049
Coordinates   1236607..1237449 (-) Length   280 a.a.
NCBI ID   WP_061603819.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC10231     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1231607..1242449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS05840 (NCTC10231_01164) - 1232434..1232928 (-) 495 WP_061603816.1 hypothetical protein -
  FGL23_RS05845 (NCTC10231_01165) - 1232946..1233653 (-) 708 WP_061603817.1 DUF3307 domain-containing protein -
  FGL23_RS05850 (NCTC10231_01166) - 1233637..1234320 (-) 684 WP_045635330.1 SatD family protein -
  FGL23_RS05855 (NCTC10231_01167) topA 1234430..1236523 (-) 2094 WP_138115438.1 type I DNA topoisomerase -
  FGL23_RS05860 (NCTC10231_01168) dprA/cilB/dalA 1236607..1237449 (-) 843 WP_061603819.1 DNA-processing protein DprA Machinery gene
  FGL23_RS05865 (NCTC10231_01169) - 1237575..1238153 (-) 579 WP_061603820.1 sugar O-acetyltransferase -
  FGL23_RS05870 (NCTC10231_01170) - 1238150..1238968 (-) 819 WP_061603821.1 PRD domain-containing protein -
  FGL23_RS05875 (NCTC10231_01171) - 1238986..1239750 (-) 765 WP_061603822.1 ribonuclease HII -
  FGL23_RS05880 (NCTC10231_01172) ylqF 1239737..1240588 (-) 852 WP_061603823.1 ribosome biogenesis GTPase YlqF -
  FGL23_RS05885 (NCTC10231_01173) - 1240733..1241071 (-) 339 WP_008808609.1 ATP cone domain-containing protein -
  FGL23_RS05890 (NCTC10231_01174) - 1241087..1241587 (-) 501 WP_061585427.1 GNAT family N-acetyltransferase -
  FGL23_RS05895 (NCTC10231_01175) - 1241812..1242411 (-) 600 WP_061603824.1 hypothetical protein -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31158.76 Da        Isoelectric Point: 6.2444

>NTDB_id=1127969 FGL23_RS05860 WP_061603819.1 1236607..1237449(-) (dprA/cilB/dalA) [Streptococcus gordonii strain NCTC10231]
MKNYDIYKLKHAGLTNGQVLNVLRYAENKEKELSLRDIAVVSECRNPALFIERYKQIDDDFLKKSFEEFPSFSILDEIYP
WDLSEIYNPPALLFYQGNIDLLELPKVAVVGSRDSSKLGNQSVQKIIKELNNELIIVSGLARGIDTAAHMAALQNGGRTI
AVIGTGLDVFYPKANKKLQSYIGKNHLVLSEYGSGEQPLKFHFPERNRIIAGLCRGVIVAEAKMRSGSLITCERAMEEGR
DVFAIPGSILDGKSDGCHHLIQEGAKCIMSGSDVLSEFDF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=1127969 FGL23_RS05860 WP_061603819.1 1236607..1237449(-) (dprA/cilB/dalA) [Streptococcus gordonii strain NCTC10231]
ATGAAAAACTATGATATTTATAAATTGAAACATGCTGGACTGACTAATGGACAAGTTCTTAATGTCTTGAGATATGCTGA
AAACAAGGAAAAGGAGCTTTCTTTGCGTGATATTGCGGTGGTTTCAGAGTGCCGTAATCCCGCCCTGTTTATAGAACGCT
ATAAGCAAATTGACGACGATTTCTTAAAAAAATCCTTTGAGGAATTTCCCTCTTTTTCTATCTTGGATGAAATTTATCCC
TGGGATTTGAGTGAGATATACAACCCACCTGCTCTTTTGTTTTATCAGGGAAATATTGATCTACTTGAATTGCCAAAAGT
AGCAGTAGTCGGAAGTCGTGATAGTAGTAAGCTTGGAAATCAGTCCGTTCAGAAAATTATTAAAGAATTGAATAATGAAT
TAATCATTGTGAGTGGATTAGCGCGTGGGATTGATACGGCTGCTCATATGGCAGCCTTACAGAATGGCGGTCGAACTATA
GCTGTTATTGGGACTGGATTAGATGTTTTTTATCCTAAGGCCAATAAGAAACTTCAGTCCTATATTGGCAAAAATCACCT
GGTTTTATCAGAATACGGTTCAGGTGAACAGCCCTTGAAGTTTCATTTTCCTGAGCGTAATCGAATTATTGCAGGTTTGT
GCAGGGGCGTCATTGTTGCTGAAGCTAAGATGAGATCTGGCAGCTTGATTACTTGTGAGCGAGCAATGGAAGAAGGAAGA
GATGTATTTGCTATTCCTGGATCTATTCTTGATGGAAAGTCTGATGGTTGTCATCATCTGATTCAAGAAGGTGCTAAGTG
CATTATGTCAGGCTCTGATGTTCTATCTGAGTTTGATTTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

78.214

100

0.782
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

77.857

100

0.779
  dprA/cilB/dalA Streptococcus pneumoniae D39

77.857

100

0.779
  dprA/cilB/dalA Streptococcus pneumoniae R6

77.857

100

0.779
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

77.857

100

0.779
  dprA/cilB/dalA Streptococcus mitis SK321

77.5

100

0.775
  dprA Streptococcus mutans UA159

66.071

100

0.661
  dprA Lactococcus lactis subsp. cremoris KW2

57.914

99.286

0.575
  dprA Legionella pneumophila strain ERS1305867

43.75

85.714

0.375

Multiple sequence alignment