Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FGK95_RS05500 Genome accession   NZ_LR590625
Coordinates   1070706..1071551 (-) Length   281 a.a.
NCBI ID   WP_003048466.1    Uniprot ID   A0AAV3FS57
Organism   Streptococcus canis strain B700072     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1065706..1076551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK95_RS05485 (SAMEA5186854_01100) - 1066888..1067604 (-) 717 WP_093998630.1 DUF3307 domain-containing protein -
  FGK95_RS05490 (SAMEA5186854_01101) - 1067597..1068262 (-) 666 WP_003048470.1 SatD family protein -
  FGK95_RS05495 (SAMEA5186854_01102) topA 1068476..1070608 (-) 2133 WP_093998629.1 type I DNA topoisomerase -
  FGK95_RS05500 (SAMEA5186854_01103) dprA 1070706..1071551 (-) 846 WP_003048466.1 DNA-processing protein DprA Machinery gene
  FGK95_RS05505 (SAMEA5186854_01104) - 1071616..1072407 (-) 792 WP_093998628.1 ribonuclease HII -
  FGK95_RS05510 (SAMEA5186854_01105) ylqF 1072397..1073245 (-) 849 WP_093998627.1 ribosome biogenesis GTPase YlqF -
  FGK95_RS05515 (SAMEA5186854_01106) - 1073464..1073904 (+) 441 WP_093998626.1 DUF1836 domain-containing protein -
  FGK95_RS05520 (SAMEA5186854_01107) trhA 1073901..1074551 (+) 651 WP_093998625.1 PAQR family membrane homeostasis protein TrhA -
  FGK95_RS05525 (SAMEA5186854_01108) - 1074667..1075578 (+) 912 WP_093998624.1 diacylglycerol/lipid kinase family protein -
  FGK95_RS05530 (SAMEA5186854_01109) - 1075628..1076062 (-) 435 WP_003048369.1 hypothetical protein -
  FGK95_RS05535 (SAMEA5186854_01111) - 1076199..1076405 (-) 207 WP_093998622.1 CsbD family protein -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 31347.45 Da        Isoelectric Point: 9.0775

>NTDB_id=1127111 FGK95_RS05500 WP_003048466.1 1070706..1071551(-) (dprA) [Streptococcus canis strain B700072]
MNHFELYKLKKAGLTNNNILRILDYQSKYQKSLSLRDMAVVSCCQHPALFIETYKQLDVKKLKQEFNQFPSVSILDKHYP
MALKEIYNPPVLLFFQGNLELLEKPKLAIVGSRRASDIGTKSVLKIIKELKNHFVIVSGLARGIDTSAHLACLKNGGQTI
AIIGTGLDRFYPKENRELQTFLGKNHLVLTEYGPGEEALSYHFPERNRIIAGLSRGILVVEAKRRSGSLITCQIGIEEGR
DIFAIPGNILDGQAEGCLQLIKEGATCVTSGIDILSEYQKG

Nucleotide


Download         Length: 846 bp        

>NTDB_id=1127111 FGK95_RS05500 WP_003048466.1 1070706..1071551(-) (dprA) [Streptococcus canis strain B700072]
GTGAATCATTTTGAACTTTATAAATTGAAAAAAGCCGGCTTGACAAATAACAATATTCTCCGTATTCTTGATTATCAAAG
CAAATACCAAAAATCGTTATCCCTTCGAGACATGGCTGTTGTTTCCTGTTGTCAACATCCTGCCTTATTCATAGAAACTT
ACAAGCAGTTAGATGTTAAAAAACTAAAGCAAGAATTTAACCAGTTTCCCAGCGTCTCTATTTTAGACAAGCATTACCCC
ATGGCACTAAAAGAAATTTATAATCCGCCAGTCCTCTTATTTTTTCAGGGAAATTTAGAACTTTTAGAAAAACCTAAATT
AGCTATTGTTGGCTCGCGTCGCGCAAGTGATATTGGAACAAAATCTGTCTTGAAAATCATAAAAGAATTAAAAAACCATT
TTGTGATTGTTAGTGGTTTAGCCAGAGGGATTGATACTAGTGCTCATTTAGCTTGCCTCAAAAATGGAGGACAAACAATC
GCTATTATTGGAACAGGGTTGGATCGTTTTTATCCTAAAGAAAATAGAGAGCTGCAAACTTTTTTAGGGAAAAATCATCT
TGTGTTAACAGAATATGGCCCAGGAGAAGAAGCTTTATCATATCACTTTCCAGAACGGAATCGTATTATTGCAGGTCTTA
GTCGAGGTATTCTTGTCGTTGAAGCCAAGCGACGTTCAGGTTCACTAATTACCTGTCAAATTGGTATAGAAGAAGGACGA
GACATTTTTGCTATTCCAGGAAATATTTTGGACGGGCAAGCCGAAGGTTGTCTTCAACTCATTAAAGAGGGGGCAACATG
TGTCACATCGGGTATAGATATCCTTTCAGAATACCAAAAAGGCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

67.266

98.932

0.665
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

60.215

99.288

0.598
  dprA/cilB/dalA Streptococcus pneumoniae D39

60.215

99.288

0.598
  dprA/cilB/dalA Streptococcus pneumoniae R6

60.215

99.288

0.598
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

60.215

99.288

0.598
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

59.857

99.288

0.594
  dprA/cilB/dalA Streptococcus mitis SK321

59.857

99.288

0.594
  dprA Lactococcus lactis subsp. cremoris KW2

58.273

98.932

0.577
  dprA Legionella pneumophila strain ERS1305867

43.75

85.409

0.374

Multiple sequence alignment