Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   FGK94_RS05645 Genome accession   NZ_LR590471
Coordinates   1229090..1230124 (-) Length   344 a.a.
NCBI ID   WP_229297268.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11854     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1224090..1235124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK94_RS05610 (NCTC11854_01152) comYH 1224908..1225861 (-) 954 WP_043029264.1 class I SAM-dependent methyltransferase Machinery gene
  FGK94_RS05620 (NCTC11854_01155) comGG 1227355..1227717 (-) 363 WP_012677238.1 competence type IV pilus minor pilin ComGG -
  FGK94_RS05625 (NCTC11854_01156) comYF 1227695..1228129 (-) 435 WP_037580631.1 competence type IV pilus minor pilin ComGF Machinery gene
  FGK94_RS05630 (NCTC11854_01157) comGE 1228116..1228358 (-) 243 WP_012677236.1 competence type IV pilus minor pilin ComGE -
  FGK94_RS05635 (NCTC11854_01158) comGD 1228363..1228788 (-) 426 WP_043029263.1 competence type IV pilus minor pilin ComGD -
  FGK94_RS05640 (NCTC11854_01159) comGC/cglC 1228766..1229089 (-) 324 WP_014622142.1 competence type IV pilus major pilin ComGC Machinery gene
  FGK94_RS05645 (NCTC11854_01160) comYB 1229090..1230124 (-) 1035 WP_229297268.1 competence type IV pilus assembly protein ComGB Machinery gene
  FGK94_RS05650 (NCTC11854_01161) comGA/cglA 1230057..1230995 (-) 939 WP_043029261.1 competence type IV pilus ATPase ComGA Machinery gene
  FGK94_RS05655 (NCTC11854_01162) - 1231152..1231820 (-) 669 WP_043029260.1 ATP-binding cassette domain-containing protein -
  FGK94_RS05660 (NCTC11854_01163) - 1231822..1233825 (-) 2004 WP_043029259.1 DUF1430 domain-containing protein -
  FGK94_RS05665 (NCTC11854_01164) - 1234362..1234727 (-) 366 WP_043029258.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39506.80 Da        Isoelectric Point: 9.4455

>NTDB_id=1126879 FGK94_RS05645 WP_229297268.1 1229090..1230124(-) (comYB) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
MISFLQRDISIPSRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNVLTDLLL
HLPHYFLGFCLLLLSLIGSFYLYARSCSRLRLFSQLSYYPIIGVLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQGLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGRELDIYAQESWETFFSQLNRATQWIQPIIFLL
VAVIIVMIYAAILLPIYQHMGDVF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1126879 FGK94_RS05645 WP_229297268.1 1229090..1230124(-) (comYB) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
TTGATCAGCTTCTTGCAGAGGGACATCTCAATACCAAGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAGGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTA
GGTTACTCTGATGCTGTTATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGATTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATCATACTTTTAGGTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGTCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGCTTTTGTCTGCTTTTGCTGTCGCTGATTGGCTCTTTTTACCTATATGCCAGGTCCTG
TAGCAGGCTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGAGTCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTAGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGGGCCTGCTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTGAGCCTAATGATTGAATACGGCGACATCAAATCAAAGCTTGGTCGAGAGCTAGATATCT
ATGCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTCAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTACTG
GTTGCTGTGATTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(29-147)

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.277

98.547

0.535
  comYB Streptococcus mutans UA159

54.277

98.547

0.535
  comYB Streptococcus gordonii str. Challis substr. CH1

52.647

98.837

0.52
  comGB/cglB Streptococcus mitis SK321

48.949

96.802

0.474
  comGB/cglB Streptococcus mitis NCTC 12261

48.802

97.093

0.474
  comGB/cglB Streptococcus pneumoniae Rx1

48.649

96.802

0.471
  comGB/cglB Streptococcus pneumoniae D39

48.649

96.802

0.471
  comGB/cglB Streptococcus pneumoniae R6

48.649

96.802

0.471
  comGB/cglB Streptococcus pneumoniae TIGR4

48.649

96.802

0.471
  comGB Lactococcus lactis subsp. cremoris KW2

46.018

98.547

0.453

Multiple sequence alignment