Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EL305_RS11355 Genome accession   NZ_LR134528
Coordinates   1906138..1907634 (+) Length   498 a.a.
NCBI ID   WP_126418105.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC12163     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1901138..1912634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL305_RS13655 - 1903538..1903705 (+) 168 WP_009346312.1 hypothetical protein -
  EL305_RS11340 (NCTC12163_01902) putP 1903795..1905321 (-) 1527 WP_002236704.1 sodium/proline symporter PutP -
  EL305_RS11350 (NCTC12163_01903) - 1905804..1906124 (+) 321 WP_002216505.1 accessory factor UbiK family protein -
  EL305_RS11355 (NCTC12163_01904) comM 1906138..1907634 (+) 1497 WP_126418105.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EL305_RS11360 (NCTC12163_01905) ftsN 1907740..1908585 (+) 846 WP_002226072.1 cell division protein FtsN -
  EL305_RS11365 (NCTC12163_01906) dsbA1 1908588..1909232 (+) 645 WP_002226073.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  EL305_RS11370 (NCTC12163_01907) - 1909265..1910086 (+) 822 WP_002226074.1 undecaprenyl-diphosphate phosphatase -
  EL305_RS11390 (NCTC12163_01910) - 1910668..1911858 (-) 1191 WP_050389241.1 class I SAM-dependent methyltransferase -
  EL305_RS11395 (NCTC12163_01911) mraZ 1912164..1912619 (+) 456 WP_002212482.1 division/cell wall cluster transcriptional repressor MraZ -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53613.67 Da        Isoelectric Point: 6.8995

>NTDB_id=1124047 EL305_RS11355 WP_126418105.1 1906138..1907634(+) (comM) [Neisseria meningitidis strain NCTC12163]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTECQVPQMPFEHGGQPDLCDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAVELMQQ
EAGESSASVLERVIAARDKQYARQGKVNAALSVSELDSQARIQKEAQEALGSLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1124047 EL305_RS11355 WP_126418105.1 1906138..1907634(+) (comM) [Neisseria meningitidis strain NCTC12163]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGTCTGCCGCATTTCAACATCGTCGGGCTGCCCGATACGGAAGTCAAAGAAAGTCGCGACCGCGTCCGTGCCGCCATTA
TTCAAAGCGGTTTTGAATTCCCCGCCAAAAAAATCACCGTCAACCTCGCCCCCGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATCGGCATCCTTGCCGCATCGGGGCAGGTTGCGCCCGAAAAACTGGCGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGCTGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAATGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCCCATTTGAACGGCATCGAACCTTTGGCGCAAACCGAATGCCAAGTTCCTCAGATGCCGTTTGAACA
TGGCGGACAACCTGATTTGTGCGATGTGAAAGGTCAGCACACCGCGCGCCTTGCTTTGGAAATCGCTGCCGCAGGCGGAC
ACAGCCTCTTGATGATGGGTCCGCCGGGAACGGGCAAGTCTATGCTCTCCCAACGGCTGCCCGGCATCCTGCCGCCGCTG
ACCGAAGACGAATTGGTAGAAGTTTGGGCATTGCGTTCGCTCCTGCCCAACCACCAGCAACAACTCGACAGCAACCGTCC
TTTCCGCAGTCCGCATCACAGCGCCAGCGCGGCGGCTATGGTCGGCGGCGGTTCCGACCCGCGTCCGGGCGAGATTTCAT
TGGCGCACCACGGCGTATTGTTTTTGGACGAGCTGCCCGAGTTCGACCGCAAAGTTTTGGAAGTTTTGCGCGAACCGTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCTGCCAAATTCCAACTTGTTGCCGCCATGAA
CCCCTGCCCGTGCGGTTATCTCGGGCATCCCGTCAAACCCTGCCGCTGCACGCCCGAAAGCGTCGCGCGTTACCGCAGCA
AGATTTCCGGGCCGCTGCTCGACCGCATCGATTTGACCATCGAAGTCCCCAGCCTGTCCGCCGTCGAACTGATGCAGCAG
GAAGCGGGCGAAAGCAGCGCGTCCGTTTTGGAACGCGTTATCGCCGCCCGCGACAAACAATACGCACGGCAGGGCAAAGT
CAACGCCGCTTTGAGCGTCAGCGAACTCGATTCCCAAGCCCGCATCCAAAAAGAAGCGCAGGAAGCATTGGGCAGCCTGC
TGGAAAAACTCTCCCTCTCCGCCCGCAGTTTCCACCGCATCATGCGCGTGGCGCGTACATTGGCGGATTTGGCGGGCGAC
GAAGAAGTCGGCAGAAGCCACGTCATGAAAGCCATAGGTTTCCGCCGCGCTTTATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.187

100

0.536
  comM Vibrio campbellii strain DS40M4

52.314

99.799

0.522
  comM Haemophilus influenzae Rd KW20

49.9

100

0.5
  comM Glaesserella parasuis strain SC1401

49.008

100

0.496
  comM Legionella pneumophila str. Paris

46.535

100

0.472
  comM Legionella pneumophila strain ERS1305867

46.535

100

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.829

100

0.438

Multiple sequence alignment