Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EL276_RS06415 Genome accession   NZ_LR134516
Coordinates   1406168..1407658 (-) Length   496 a.a.
NCBI ID   WP_126304788.1    Uniprot ID   A0A3S5F6K2
Organism   Neisseria animaloris strain NCTC12227     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1401168..1412658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL276_RS06385 (NCTC12227_01300) - 1401683..1402615 (+) 933 WP_085390296.1 branched-chain amino acid transaminase -
  EL276_RS06390 (NCTC12227_01301) - 1402708..1402893 (+) 186 WP_085390295.1 zinc-finger domain-containing protein -
  EL276_RS06395 (NCTC12227_01302) - 1403073..1403420 (+) 348 WP_085390294.1 MliC family protein -
  EL276_RS06400 (NCTC12227_01303) - 1403598..1404425 (-) 828 WP_107879584.1 undecaprenyl-diphosphate phosphatase -
  EL276_RS06405 (NCTC12227_01304) dsbA2 1404519..1405226 (-) 708 WP_107879585.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  EL276_RS06410 (NCTC12227_01305) - 1405249..1406058 (-) 810 WP_126304787.1 SPOR domain-containing protein -
  EL276_RS06415 (NCTC12227_01306) comM 1406168..1407658 (-) 1491 WP_126304788.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EL276_RS06420 (NCTC12227_01307) - 1407675..1407956 (-) 282 WP_085390289.1 accessory factor UbiK family protein -
  EL276_RS06425 (NCTC12227_01308) - 1408076..1408516 (-) 441 WP_107879588.1 hypothetical protein -
  EL276_RS06430 (NCTC12227_01309) - 1408592..1409392 (-) 801 WP_085390287.1 NUDIX domain-containing protein -
  EL276_RS06435 (NCTC12227_01310) - 1409624..1410298 (+) 675 WP_126304789.1 hypothetical protein -
  EL276_RS06440 (NCTC12227_01311) - 1410367..1411407 (-) 1041 WP_126304790.1 endonuclease/exonuclease/phosphatase family protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53608.56 Da        Isoelectric Point: 6.8671

>NTDB_id=1123730 EL276_RS06415 WP_126304788.1 1406168..1407658(-) (comM) [Neisseria animaloris strain NCTC12227]
MSLAVVYSRALNGMNAPLVEVEAHLANGLPAFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQIASDKLPQYEFAGELALSGTLRPVRGALAMAWQAMQAGRAFVLPSENAEQTAVMSGITVYGADSL
GQVAAHLNAVEPLAQTVYDAHIRPSENINFPDLKDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLAQRLPGILPPL
TDEELIEVWSLRSLLPNHRQELDYKKPYQTPHHTSSQVAIVGGNSGPGEISLAHNGILFLDELPEFDRKVLEVLREPLES
GEIHISRASHKAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESIVRYRSKISGPLLDRIDLTIEVPGLSAAELMRQEA
GESSAEVLKRVEAAREKQYSRQGKVNAALSVTELDTIAMVSKEAQQALGELLEKLSLSARSFHRIMRVARTLADLGNDET
VNRSHVLQAVSFRRAL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1123730 EL276_RS06415 WP_126304788.1 1406168..1407658(-) (comM) [Neisseria animaloris strain NCTC12227]
ATGTCCTTAGCCGTTGTTTACAGCCGTGCATTAAACGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCTCATCTTGCCAA
CGGTTTGCCCGCTTTCAATATCGTCGGTCTGCCCGACACCGAAGTCAAAGAAAGCCGCGACCGCGTGCGTGCTGCCATCA
TCCAGAGCGGATTCGATTTCCCCGCTAAAAAAATCACTGTAAACCTTGCGCCCGCAGACTTGCCTAAAGAGTCGGGGCGT
TTTGATTTGCCTATCGCTCTCGGTATCTTGGCCGCATCGGGGCAGATCGCCAGTGACAAACTGCCGCAATATGAATTCGC
CGGCGAGCTGGCTTTGTCCGGCACCTTGCGCCCTGTGCGCGGTGCACTGGCAATGGCTTGGCAGGCCATGCAGGCGGGCA
GGGCATTCGTGCTGCCGTCTGAAAACGCCGAACAAACCGCGGTAATGAGCGGCATCACTGTTTACGGTGCCGACAGTCTG
GGCCAAGTTGCCGCCCATCTGAATGCAGTCGAACCGTTGGCGCAAACCGTTTATGATGCACATATCAGGCCGTCTGAAAA
CATCAATTTCCCCGATTTGAAAGACGTTAAAGGCCAGCATACGGCGCGGTTGGCTTTGGAAATTGCCGCCGCGGGCGGGC
ACAGCCTGCTGATGATGGGGCCGCCGGGCACGGGAAAATCGATGCTCGCCCAACGTTTGCCGGGTATTTTGCCGCCGCTG
ACCGACGAGGAATTGATTGAGGTGTGGTCGCTGCGCTCGTTGCTGCCGAATCATAGGCAGGAATTGGACTACAAAAAACC
TTATCAAACCCCCCATCATACTTCCAGCCAAGTGGCCATAGTCGGCGGAAATTCGGGGCCCGGAGAAATCTCGTTGGCTC
ACAACGGAATTTTATTTTTAGATGAACTTCCCGAGTTTGACCGCAAGGTTTTAGAGGTGTTGCGCGAGCCTTTGGAAAGT
GGGGAAATTCACATTTCCCGCGCTTCCCATAAGGCGGTTTATCCGGCCAAATTCCAATTGGTTGCGGCAATGAATCCGTG
TCCGTGCGGTTACCTCGGTCATCCGGTTAAGCCGTGCCGCTGCACGCCCGAAAGTATAGTCCGCTACCGCAGCAAAATCT
CCGGCCCGCTGCTAGACCGCATTGATTTAACCATTGAAGTCCCCGGCCTTTCCGCAGCCGAATTGATGCGGCAAGAGGCG
GGCGAAAGCAGTGCGGAAGTTTTAAAACGCGTTGAAGCGGCAAGAGAAAAACAGTATTCGAGACAAGGTAAAGTGAATGC
CGCCCTGAGTGTTACGGAACTGGATACTATTGCAATGGTCAGTAAAGAGGCCCAACAAGCGTTAGGGGAATTGCTGGAAA
AGTTATCGCTGTCGGCCCGCAGCTTCCACCGTATTATGCGGGTGGCGCGCACGTTGGCGGATTTGGGCAATGACGAAACG
GTAAACCGTTCGCATGTGTTGCAGGCAGTAAGTTTTCGTCGGGCTTTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S5F6K2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.113

100

0.522
  comM Vibrio campbellii strain DS40M4

51.509

100

0.516
  comM Glaesserella parasuis strain SC1401

49.407

100

0.504
  comM Haemophilus influenzae Rd KW20

49.499

100

0.498
  comM Legionella pneumophila str. Paris

45.759

100

0.468
  comM Legionella pneumophila strain ERS1305867

45.759

100

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.34

100

0.44

Multiple sequence alignment