Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA2   Type   Machinery gene
Locus tag   EL276_RS06405 Genome accession   NZ_LR134516
Coordinates   1404519..1405226 (-) Length   235 a.a.
NCBI ID   WP_107879585.1    Uniprot ID   A0A3S4YRB9
Organism   Neisseria animaloris strain NCTC12227     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1399519..1410226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL276_RS06375 (NCTC12227_01298) lapB 1399903..1401072 (-) 1170 WP_085390298.1 lipopolysaccharide assembly protein LapB -
  EL276_RS06380 (NCTC12227_01299) - 1401079..1401393 (-) 315 WP_126304786.1 lipopolysaccharide assembly LapA domain-containing protein -
  EL276_RS06385 (NCTC12227_01300) - 1401683..1402615 (+) 933 WP_085390296.1 branched-chain amino acid transaminase -
  EL276_RS06390 (NCTC12227_01301) - 1402708..1402893 (+) 186 WP_085390295.1 zinc-finger domain-containing protein -
  EL276_RS06395 (NCTC12227_01302) - 1403073..1403420 (+) 348 WP_085390294.1 MliC family protein -
  EL276_RS06400 (NCTC12227_01303) - 1403598..1404425 (-) 828 WP_107879584.1 undecaprenyl-diphosphate phosphatase -
  EL276_RS06405 (NCTC12227_01304) dsbA2 1404519..1405226 (-) 708 WP_107879585.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  EL276_RS06410 (NCTC12227_01305) - 1405249..1406058 (-) 810 WP_126304787.1 SPOR domain-containing protein -
  EL276_RS06415 (NCTC12227_01306) comM 1406168..1407658 (-) 1491 WP_126304788.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EL276_RS06420 (NCTC12227_01307) - 1407675..1407956 (-) 282 WP_085390289.1 accessory factor UbiK family protein -
  EL276_RS06425 (NCTC12227_01308) - 1408076..1408516 (-) 441 WP_107879588.1 hypothetical protein -
  EL276_RS06430 (NCTC12227_01309) - 1408592..1409392 (-) 801 WP_085390287.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 25710.75 Da        Isoelectric Point: 9.9449

>NTDB_id=1123729 EL276_RS06405 WP_107879585.1 1404519..1405226(-) (dsbA2) [Neisseria animaloris strain NCTC12227]
MKLKTVLLTAVAALALTANVYAATEGKDYTVLPKPIPQSQADKIEVLEFFGYFCVHCYHLDPVLLKHAKTFPSDTYLRTE
HVVWQPEMLGFARVAAAVNSSGLKYQANQAVFRAVYEEKINLADSATFKQWAAAQKSFDGKKLIAAYDSFGNQAQAKRME
DLTNTYQISGTPTVIVGGKYQVKFTGDWQAGMKTIDELVAKVRTERGMKTPSAKPVAVAPALKSKGALLAKAANK

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1123729 EL276_RS06405 WP_107879585.1 1404519..1405226(-) (dsbA2) [Neisseria animaloris strain NCTC12227]
ATGAAATTGAAAACCGTATTGCTGACCGCCGTTGCAGCATTGGCATTGACAGCTAATGTTTACGCGGCGACTGAAGGTAA
AGATTATACCGTATTACCCAAGCCGATTCCTCAGAGCCAGGCAGATAAAATCGAGGTATTGGAGTTTTTCGGTTATTTCT
GCGTACATTGTTATCACTTGGATCCTGTGCTCCTGAAGCATGCAAAAACATTCCCTTCAGACACTTATCTGCGTACCGAA
CATGTTGTATGGCAACCTGAAATGCTGGGGTTCGCACGTGTGGCGGCTGCAGTAAACAGTTCAGGTTTGAAATACCAGGC
CAATCAGGCCGTATTCCGTGCGGTTTATGAAGAGAAAATCAATTTGGCCGATTCTGCGACCTTTAAGCAATGGGCGGCAG
CCCAAAAGAGTTTTGATGGCAAAAAACTGATTGCCGCCTATGACTCTTTCGGCAATCAAGCCCAAGCGAAAAGAATGGAA
GATTTGACCAATACCTATCAAATCAGCGGTACTCCGACAGTTATCGTCGGTGGTAAATACCAAGTGAAATTTACCGGCGA
CTGGCAGGCAGGGATGAAAACAATTGATGAATTGGTAGCAAAAGTCCGTACCGAGCGTGGTATGAAAACGCCTTCTGCCA
AGCCGGTTGCAGTTGCGCCTGCTTTGAAAAGCAAAGGGGCATTGCTTGCAAAGGCTGCCAACAAATAA

Domains

Predicted by InterproScan.

DSBA-like thioredoxin domain (DSBA)

(87-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4YRB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA2 Neisseria meningitidis MC58

61.749

77.872

0.481
  dsbA1 Neisseria meningitidis MC58

59.239

78.298

0.464

Multiple sequence alignment