Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EL216_RS10675 Genome accession   NZ_LR134440
Coordinates   2264370..2265860 (+) Length   496 a.a.
NCBI ID   WP_085390290.1    Uniprot ID   -
Organism   Neisseria animaloris strain NCTC12228     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2259370..2270860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL216_RS10645 (NCTC12228_02149) - 2259557..2260597 (+) 1041 WP_085390284.1 endonuclease/exonuclease/phosphatase family protein -
  EL216_RS10650 (NCTC12228_02150) - 2260667..2261587 (-) 921 WP_085390285.1 hypothetical protein -
  EL216_RS10655 (NCTC12228_02151) - 2261726..2262403 (-) 678 WP_085390286.1 hypothetical protein -
  EL216_RS10660 (NCTC12228_02152) - 2262635..2263435 (+) 801 WP_085390287.1 NUDIX domain-containing protein -
  EL216_RS10665 (NCTC12228_02153) - 2263511..2263951 (+) 441 WP_085390288.1 hypothetical protein -
  EL216_RS10670 (NCTC12228_02154) - 2264072..2264353 (+) 282 WP_085390289.1 accessory factor UbiK family protein -
  EL216_RS10675 (NCTC12228_02155) comM 2264370..2265860 (+) 1491 WP_085390290.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EL216_RS10680 (NCTC12228_02156) - 2265970..2266779 (+) 810 WP_085390291.1 SPOR domain-containing protein -
  EL216_RS10685 (NCTC12228_02157) dsbA2 2266802..2267509 (+) 708 WP_085390292.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  EL216_RS10690 (NCTC12228_02158) - 2267603..2268430 (+) 828 WP_085390293.1 undecaprenyl-diphosphate phosphatase -
  EL216_RS10695 (NCTC12228_02159) - 2268608..2268955 (-) 348 WP_085390294.1 MliC family protein -
  EL216_RS10700 (NCTC12228_02160) - 2269135..2269320 (-) 186 WP_085390295.1 zinc-finger domain-containing protein -
  EL216_RS10705 (NCTC12228_02161) - 2269413..2270345 (-) 933 WP_085390296.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53635.59 Da        Isoelectric Point: 7.0075

>NTDB_id=1122873 EL216_RS10675 WP_085390290.1 2264370..2265860(+) (comM) [Neisseria animaloris strain NCTC12228]
MSLAVVYSRALNGMNAPLVEVEAHLANGLPAFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQIAGDKLPQYEFAGELALSGTLRPVRGALAMAWQAMQAGRAFVLPSENAEQTAVMRGITVYGADSL
GQVAAHLNAVEPLAQTVYDAHIRPSENINFPDLKDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLAQRLPGILPPL
TDEELIEVWSLRSLLPNHRQELDYKKPYQTPHHTSSQVAIVGGNSGPGEISLAHNGILFLDELPEFDRKVLEVLREPLES
GEIHISRASHKAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESIARYRSKISGPLLDRIDLTIEVPGLSSAELMRQEA
GESSAEVLKRVEAAREKQYSRQGKVNAALSVTELDTIAMVSKEAQQALGELLEKLSLSARSFHRIMRVARTLADLGNDET
VNRSHVLQAVSFRRAL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1122873 EL216_RS10675 WP_085390290.1 2264370..2265860(+) (comM) [Neisseria animaloris strain NCTC12228]
ATGTCCTTAGCCGTTGTTTACAGCCGTGCATTAAACGGTATGAATGCGCCGTTGGTCGAGGTGGAAGCTCACCTTGCCAA
CGGTTTACCCGCTTTCAATATCGTCGGTCTGCCCGACACCGAAGTCAAAGAAAGCCGCGACCGTGTGCGAGCGGCCATCA
TACAGAGCGGATTCGATTTCCCCGCTAAAAAAATCACTGTAAACCTTGCGCCCGCAGACTTGCCTAAAGAGTCGGGGCGT
TTTGATTTGCCTATCGCTCTCGGTATCTTGGCCGCATCGGGGCAGATCGCCGGTGACAAACTGCCCCAATATGAATTCGC
CGGCGAGCTGGCTTTGTCCGGCACCTTGCGCCCCGTGCGCGGTGCACTGGCAATGGCTTGGCAAGCCATGCAGGCGGGCA
GGGCATTCGTGCTGCCGTCTGAAAACGCCGAACAAACTGCGGTAATGAGGGGCATCACTGTTTACGGTGCCGACAGTCTG
GGCCAAGTTGCCGCCCATCTGAATGCAGTCGAACCGTTGGCGCAAACCGTTTATGATGCGCATATCAGGCCGTCTGAAAA
CATCAATTTCCCCGATTTGAAAGACGTTAAAGGCCAGCATACGGCGCGGTTGGCTTTGGAAATTGCCGCCGCGGGCGGAC
ACAGCCTGCTGATGATGGGACCACCGGGCACGGGAAAATCGATGCTCGCCCAACGTTTGCCGGGTATTTTGCCGCCGCTG
ACCGACGAGGAATTGATTGAGGTGTGGTCGCTGCGCTCGTTGCTGCCGAATCATAGGCAGGAATTGGACTACAAAAAACC
TTATCAAACCCCCCATCATACTTCCAGCCAAGTGGCCATAGTCGGCGGAAATTCGGGGCCCGGAGAAATCTCGTTGGCTC
ACAACGGAATTTTATTTTTAGATGAACTTCCCGAGTTTGACCGCAAGGTTTTAGAGGTGTTGCGCGAGCCTTTGGAAAGT
GGGGAAATTCACATTTCCCGCGCTTCCCATAAGGCGGTTTATCCGGCCAAATTCCAATTGGTTGCGGCAATGAATCCGTG
TCCGTGCGGTTACCTCGGTCATCCGGTTAAGCCTTGCCGCTGCACGCCCGAAAGTATAGCCCGCTACCGCAGCAAAATCT
CCGGCCCACTGCTAGACCGCATTGATTTAACCATTGAAGTCCCTGGCCTTTCCTCAGCCGAATTGATGCGGCAAGAGGCG
GGCGAAAGCAGTGCGGAAGTTTTAAAACGCGTTGAAGCGGCAAGAGAAAAACAGTATTCGAGACAAGGTAAAGTGAATGC
CGCCCTGAGTGTTACGGAACTGGATACTATTGCAATGGTCAGTAAAGAGGCCCAACAAGCGTTAGGGGAATTGCTGGAAA
AGTTATCGCTGTCGGCCCGCAGCTTCCACCGTATTATGCGGGTGGCGCGCACGTTGGCGGATTTGGGCAATGACGAAACG
GTAAACCGTTCGCATGTGTTGCAGGCAGTAAGTTTTCGTCGGGCTTTGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.113

100

0.522
  comM Vibrio campbellii strain DS40M4

51.509

100

0.516
  comM Glaesserella parasuis strain SC1401

49.012

100

0.5
  comM Haemophilus influenzae Rd KW20

49.299

100

0.496
  comM Legionella pneumophila str. Paris

45.759

100

0.468
  comM Legionella pneumophila strain ERS1305867

45.759

100

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.34

100

0.44

Multiple sequence alignment