Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   EL220_RS04350 Genome accession   NZ_LR134388
Coordinates   983891..985996 (+) Length   701 a.a.
NCBI ID   WP_027270600.1    Uniprot ID   A0A0W0YBN3
Organism   Legionella sainthelensi strain NCTC11988     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 978891..990996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL220_RS04325 (NCTC11988_00902) - 979490..980914 (-) 1425 WP_027270595.1 hypothetical protein -
  EL220_RS04330 (NCTC11988_00903) pilM 981151..982215 (+) 1065 WP_027270596.1 type IV pilus assembly protein PilM Machinery gene
  EL220_RS04335 (NCTC11988_00904) pilN 982220..982783 (+) 564 WP_027270597.1 PilN domain-containing protein Machinery gene
  EL220_RS04340 (NCTC11988_00905) pilO 982780..983379 (+) 600 WP_027270598.1 type 4a pilus biogenesis protein PilO Machinery gene
  EL220_RS04345 (NCTC11988_00906) pilP 983376..983882 (+) 507 WP_027270599.1 pilus assembly protein PilP Machinery gene
  EL220_RS04350 (NCTC11988_00907) pilQ 983891..985996 (+) 2106 WP_027270600.1 type IV pilus secretin PilQ Machinery gene
  EL220_RS04355 (NCTC11988_00908) aroK 986320..986847 (+) 528 WP_003632469.1 shikimate kinase AroK -
  EL220_RS04360 (NCTC11988_00909) aroB 986834..987937 (+) 1104 WP_027270602.1 3-dehydroquinate synthase -
  EL220_RS04365 (NCTC11988_00910) - 987940..989382 (+) 1443 WP_027270603.1 SPOR domain-containing protein -
  EL220_RS04370 (NCTC11988_00911) - 989709..989897 (+) 189 WP_035905911.1 hypothetical protein -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 78014.07 Da        Isoelectric Point: 9.6425

>NTDB_id=1122614 EL220_RS04350 WP_027270600.1 983891..985996(+) (pilQ) [Legionella sainthelensi strain NCTC11988]
MQRIAVFLIFIGMSLSVAFAQNNSLISVKVIPLPEEKLRIDFIFAHPLKKQPGSFVIENPARIVIDFVDTNLQLPTEQKT
KEIKLGSLNNYTLVTVGARVRAVLDLKYAVPYLGSISGKVYTIILNGKSNELFQAPKEILITNRPVKTSYEITHFDFRGV
ERQGGRAVVDVSSTSIPIDVEEHDKEIIVKFLNTKVPQNLRKRFDVSDFRSPVNLITFQQDGKNARMTLLGERYFGHNIY
QINKQFMVDLFPLTQEEIEQEKLKKQVFSGRRISLNFQNISIRSVLQLLADFTGINIVASDRVQGNITLRLNNIPWDQAL
DIILKTQGLAKRQNGNVMVIDTQKSFNDMEEQQLKSQHKIQKLEPIRSELIQINYAKATDLAILIKDRQNSLLSDKGKVS
VDTRTNTIWIQDSGSRVDEVRKLIKELDVPVKQVLIEARIVEVTKDFAQDLGIRWGVSKPQHLSGTLAGANQLAQGVAPA
DVTPFTDRLNLDLVAAPLTKANPATVGIALAQLGDNILLDLELSALESEGLAELISSPRLITANQQPALIDSGQEIPYQQ
STSSGATAVAFKKAVLSLKVIPQITPDNKILMDLKINQDLALPNQTYNGVPAIATKEIQTNVLVSNGQTIVLGGIYQQDK
SKTITRVPFFGQLPVVGNLFKNTQIGVHNDELLIFITPKIIANSLSITTIEGRNPVRFDEK

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=1122614 EL220_RS04350 WP_027270600.1 983891..985996(+) (pilQ) [Legionella sainthelensi strain NCTC11988]
GTGCAAAGAATAGCTGTTTTTTTAATTTTTATAGGAATGAGCTTAAGCGTGGCTTTTGCTCAGAATAACTCGTTGATATC
CGTGAAGGTGATTCCTTTACCGGAAGAAAAGTTACGTATAGATTTTATATTTGCTCATCCGCTTAAAAAACAACCAGGAA
GTTTTGTAATCGAAAATCCGGCACGGATTGTTATCGATTTCGTTGACACTAACTTACAGTTGCCCACAGAGCAGAAAACA
AAGGAAATTAAATTAGGTTCTCTGAATAATTACACTCTAGTAACTGTTGGCGCTCGTGTTCGAGCTGTTTTGGATTTAAA
ATATGCCGTGCCTTATTTAGGCTCAATTTCAGGCAAGGTTTATACGATTATTTTAAATGGAAAGAGCAATGAATTATTTC
AAGCTCCTAAAGAAATTTTGATTACCAATCGCCCTGTAAAAACAAGTTATGAAATTACCCATTTTGATTTTCGAGGAGTT
GAGCGTCAGGGGGGGCGTGCTGTAGTTGACGTTTCAAGTACCAGTATCCCTATTGATGTAGAAGAACACGACAAAGAAAT
TATCGTTAAATTTTTAAATACTAAAGTGCCTCAAAATTTAAGGAAACGTTTTGATGTTTCTGATTTTCGCAGCCCAGTGA
ATTTGATTACCTTTCAGCAAGATGGTAAAAATGCGCGTATGACCTTGTTGGGGGAAAGATATTTTGGTCATAATATCTAT
CAGATTAACAAGCAGTTTATGGTTGATTTATTTCCGTTGACTCAGGAAGAAATTGAACAGGAAAAACTTAAAAAACAGGT
ATTTTCTGGAAGACGGATTTCTTTAAATTTCCAAAATATCAGCATCCGATCGGTTTTACAGTTACTTGCTGATTTTACAG
GGATAAATATTGTTGCAAGTGATAGAGTTCAAGGTAATATTACTTTGCGATTAAATAATATACCCTGGGATCAAGCATTA
GATATTATTTTAAAAACACAAGGTTTGGCAAAGCGTCAAAATGGAAACGTGATGGTGATCGACACGCAAAAATCGTTTAA
TGACATGGAAGAGCAGCAGCTTAAAAGCCAACATAAAATTCAAAAACTTGAACCGATACGTTCCGAACTAATACAAATTA
ATTATGCTAAAGCAACCGATCTCGCAATTTTAATTAAAGACAGACAAAATTCACTTTTATCCGACAAAGGTAAAGTTAGT
GTTGATACGCGTACTAATACCATATGGATCCAAGATAGTGGGAGTAGAGTAGATGAGGTTAGAAAATTAATTAAGGAATT
AGATGTTCCTGTAAAACAAGTACTGATAGAAGCCCGTATCGTTGAGGTAACTAAAGATTTTGCCCAAGATTTAGGTATTC
GTTGGGGTGTTTCTAAGCCACAACATCTAAGTGGTACTTTGGCTGGAGCAAATCAATTAGCACAAGGCGTTGCTCCTGCA
GATGTTACACCTTTTACAGACAGATTAAATTTGGATTTGGTCGCAGCGCCTTTGACAAAGGCAAATCCCGCTACAGTAGG
CATTGCTTTAGCTCAGCTTGGTGATAATATCTTACTTGATTTGGAGCTTTCTGCTTTAGAAAGTGAAGGTCTCGCAGAGC
TGATTTCAAGCCCAAGGTTAATTACAGCAAACCAGCAGCCCGCATTAATTGACTCAGGGCAAGAAATTCCTTATCAACAA
TCAACTTCCAGTGGTGCAACTGCAGTGGCATTTAAAAAAGCCGTATTGAGTTTAAAAGTAATCCCACAGATTACTCCTGA
TAACAAAATCCTTATGGATTTAAAAATTAATCAAGATCTTGCATTACCTAATCAGACTTATAATGGAGTTCCCGCAATTG
CAACTAAAGAAATTCAGACAAATGTTTTAGTGAGCAATGGACAAACTATTGTATTGGGGGGAATTTATCAACAAGATAAG
AGCAAGACTATTACCAGGGTGCCTTTTTTTGGTCAATTGCCGGTAGTAGGTAATTTATTTAAAAATACACAAATTGGGGT
GCATAATGATGAGCTGCTTATTTTTATTACGCCTAAAATAATAGCTAATTCGTTATCTATCACTACAATTGAGGGGCGAA
ATCCAGTACGTTTTGATGAAAAATAG

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(41-112)

Bacterial type II/III secretion system short domain (Secretin_N)

(369-433)

Bacterial type II and III secretion system protein (Secretin)

(525-681)

Secretin and TonB N terminus short domain (STN)

(296-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0YBN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Legionella pneumophila strain Lp02

71.196

96.576

0.688
  pilQ Legionella pneumophila strain ERS1305867

71.259

96.291

0.686
  comQ Acinetobacter baylyi ADP1

36.767

99.715

0.367

Multiple sequence alignment