Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VV93_RS15135 Genome accession   NZ_CP009261
Coordinates   3263539..3265062 (-) Length   507 a.a.
NCBI ID   WP_039555035.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 93U204     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3258539..3270062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV93_RS15115 (VV93_v1c29570) - 3259824..3260810 (+) 987 WP_039555028.1 serine/threonine protein kinase -
  VV93_RS15120 (VV93_v1c29580) - 3260843..3261448 (+) 606 WP_011079070.1 thiol:disulfide interchange protein DsbA/DsbL -
  VV93_RS15125 (VV93_v1c29590) - 3261502..3262383 (-) 882 WP_039555030.1 acyltransferase -
  VV93_RS15130 (VV93_v1c29600) - 3262526..3263500 (+) 975 WP_039555033.1 DUF2860 domain-containing protein -
  VV93_RS15135 (VV93_v1c29610) comM 3263539..3265062 (-) 1524 WP_039555035.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VV93_RS15140 (VV93_v1c29620) ilvG 3265532..3267178 (+) 1647 WP_039555037.1 acetolactate synthase 2 catalytic subunit -
  VV93_RS15145 (VV93_v1c29630) ilvM 3267190..3267474 (+) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  VV93_RS15150 (VV93_v1c29640) ilvE 3267486..3268424 (+) 939 WP_011151436.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54781.91 Da        Isoelectric Point: 9.0773

>NTDB_id=112169 VV93_RS15135 WP_039555035.1 3263539..3265062(-) (comM) [Vibrio vulnificus strain 93U204]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFIGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNMHKSACSL
IEVCAYLCGQQALSLHQTKQALQPSSHSRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKARVSQARERMQHRNSKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
ITRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=112169 VV93_RS15135 WP_039555035.1 3263539..3265062(-) (comM) [Vibrio vulnificus strain 93U204]
ATGGGGTTGGCGATTATTCATAGCCGCGCCAGTGTGGGCGTAGAAGCGCCTTCAGTGAGCGTGGAAGTGCACATCAGTAA
CGGTTTACCGGGATTTACCTTAGTGGGGTTGCCGGAAACCACCGTGAAGGAGTCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGTAACTTCCAATTTCCTGCCAAGCGGATCACCGTCAACTTGGCACCTGCCGATCTGCCCAAAGAAGGGGGACGT
TTTGACTTGCCGATCGCACTTGGCATTTTGGCCGCTTCCGAGCAGATCTCAGTTCAGTTTCTCCAGCAACATGAATTTAT
CGGTGAGTTAGCCTTAAGTGGTGAGCTGCGAGCGGTGAAAGGGGTACTGCCAGCCGCACTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTGCCTCATGCTAATGGGGATCAAGCCGCCTTGGTTGGCAAAAACATGCATAAATCAGCGTGCTCGTTG
ATTGAAGTTTGTGCTTACTTATGTGGCCAGCAAGCCCTGTCATTACATCAAACCAAGCAAGCATTGCAGCCCTCATCACA
CAGTCGAGATTTACAAGACATCATTGGTCAGCAACAAGGAAAGCGCGCGTTGGAGATTGCCGCTGCGGGCAATCACAATT
TATTGTTTTTGGGGCCTCCAGGGACGGGTAAAACCATGCTGGCGTCACGTTTGCGAGATCTGCTGCCTGAAATGAGTGAG
GAAGAGGCGATGGAAACGGCAGCGGTGGCTTCTTTAACACAAAGCGATATCAACGAGCACAATTGGAAGCAACGGCCGTT
TCGCGCACCGCATCACTCGAGTTCTATGGCGGCGTTGGTGGGCGGTGGAACCATTCCGCGTCCTGGAGAAATCTCACTCG
CCCACAACGGCTTACTATTTTTGGATGAGATGCCGGAATTTGAGCGCAAAGTGCTCGATTCAATGCGCGAGCCGCTAGAG
TCGGGGGAAATCATCATTTCACGAGCGCAAGGTAAAACTCGTTTTCCTGCTCGCTTTCAGTTGGTCGGAGCGCTGAATCC
GAGCCCTACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GGCCACTTTTGGATCGTTTTGATATGTCACTCGAGATCCCCGCATTACCCAAAGGCACATTGGCGGAAGGGGGGGACCGT
GGTGAACCAACGGCGGTGGTTAAGGCGCGAGTGTCGCAGGCGAGAGAGCGAATGCAGCATCGTAATAGCAAGGTGAATGC
CCTATTGGGCAGCCGAGAAATCGAAGCGTTTTGTCCACTAAGTAAGCAGGATGCCGAGTTTCTTGAAACTGCGTTGCACC
GTTTGGGGTTATCGATTCGCGCTTATCACCGCATCATTAAAGTGGCGCGAACCATTGCCGATTTAGAAGGCGCACCTCAG
ATCACGCGTGCGCACTTAGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGCTCACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

87.574

100

0.876
  comM Vibrio cholerae O1 biovar El Tor strain E7946

84.221

100

0.842
  comM Vibrio cholerae strain A1552

84.221

100

0.842
  comM Haemophilus influenzae Rd KW20

64.694

100

0.647
  comM Glaesserella parasuis strain SC1401

62.648

99.803

0.625
  comM Legionella pneumophila str. Paris

50.605

97.83

0.495
  comM Legionella pneumophila strain ERS1305867

50.605

97.83

0.495
  comM Acinetobacter baylyi ADP1

49.194

97.83

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment