Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   EL144_RS05035 Genome accession   NZ_LR134327
Coordinates   1043933..1044259 (-) Length   108 a.a.
NCBI ID   WP_005705031.1    Uniprot ID   A0A0K1N2K6
Organism   Aggregatibacter aphrophilus ATCC 33389 strain NCTC 5906     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1038933..1049259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL144_RS05010 (NCTC5906_01013) serA 1039667..1040899 (-) 1233 WP_005705037.1 phosphoglycerate dehydrogenase -
  EL144_RS05015 (NCTC5906_01014) rpiA 1040923..1041579 (-) 657 WP_005701681.1 ribose-5-phosphate isomerase RpiA -
  EL144_RS05020 (NCTC5906_01015) hemW 1041692..1042846 (-) 1155 WP_032995442.1 radical SAM family heme chaperone HemW -
  EL144_RS05025 (NCTC5906_01016) - 1042860..1043183 (-) 324 WP_005705034.1 YbjQ family protein -
  EL144_RS05030 (NCTC5906_01017) rdgB 1043224..1043823 (-) 600 WP_032995441.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  EL144_RS05035 (NCTC5906_01018) comE1/comEA 1043933..1044259 (-) 327 WP_005705031.1 helix-hairpin-helix domain-containing protein Machinery gene
  EL144_RS05040 (NCTC5906_01019) ispH 1044546..1045490 (-) 945 WP_005705029.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EL144_RS05045 (NCTC5906_01020) lspA 1045490..1045984 (-) 495 WP_005705028.1 signal peptidase II -
  EL144_RS05050 (NCTC5906_01021) ileS 1046070..1048892 (-) 2823 WP_050332951.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 11432.17 Da        Isoelectric Point: 9.6912

>NTDB_id=1121600 EL144_RS05035 WP_005705031.1 1043933..1044259(-) (comE1/comEA) [Aggregatibacter aphrophilus ATCC 33389 strain NCTC 5906]
MKAMKHLLATAFVFGSVFAGSAVAAEKTAEPVQLEQPAVQNSVGDKVNINTATAAEIQKALVGIGAKKAEAVVQYREKHG
NFSAVEQLLEVQGIGKATLEKNRDRIAL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1121600 EL144_RS05035 WP_005705031.1 1043933..1044259(-) (comE1/comEA) [Aggregatibacter aphrophilus ATCC 33389 strain NCTC 5906]
ATGAAAGCAATGAAGCATCTTTTAGCCACCGCTTTTGTGTTCGGTTCGGTGTTTGCAGGTTCTGCGGTTGCCGCAGAAAA
AACGGCTGAGCCGGTACAACTTGAACAACCGGCGGTGCAAAACAGTGTTGGTGATAAAGTGAATATTAACACCGCTACAG
CAGCAGAAATTCAGAAAGCGCTTGTAGGCATTGGTGCGAAAAAAGCGGAGGCGGTTGTGCAATATCGTGAAAAACACGGT
AATTTCAGCGCAGTGGAACAATTATTGGAAGTACAGGGGATTGGTAAAGCGACATTAGAGAAGAATCGCGATCGTATCGC
ATTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(45-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K1N2K6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

61.947

100

0.648
  comEA/comE1 Glaesserella parasuis strain SC1401

54.867

100

0.574
  comEA Vibrio parahaemolyticus RIMD 2210633

42.857

97.222

0.417
  comEA Vibrio cholerae C6706

47.619

77.778

0.37
  comEA Vibrio cholerae strain A1552

47.619

77.778

0.37
  comEA Acinetobacter baylyi ADP1

52

69.444

0.361

Multiple sequence alignment