Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EL258_RS02470 Genome accession   NZ_LR134302
Coordinates   539421..540953 (-) Length   510 a.a.
NCBI ID   WP_100855157.1    Uniprot ID   -
Organism   Achromobacter spanius strain NCTC13519     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 534421..545953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL258_RS02445 (NCTC13519_00495) - 534590..534931 (-) 342 WP_006218744.1 integration host factor subunit alpha -
  EL258_RS02450 (NCTC13519_00496) pheT 534935..537352 (-) 2418 WP_100855159.1 phenylalanine--tRNA ligase subunit beta -
  EL258_RS02455 (NCTC13519_00497) pheS 537366..538388 (-) 1023 WP_006218742.1 phenylalanine--tRNA ligase subunit alpha -
  EL258_RS02460 (NCTC13519_00498) rplT 538466..538825 (-) 360 WP_100855158.1 50S ribosomal protein L20 -
  EL258_RS02465 (NCTC13519_00499) rpmI 538841..539038 (-) 198 WP_006218740.1 50S ribosomal protein L35 -
  EL258_RS02470 (NCTC13519_00500) comM 539421..540953 (-) 1533 WP_100855157.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EL258_RS02475 (NCTC13519_00501) - 541119..541370 (-) 252 WP_100855156.1 accessory factor UbiK family protein -
  EL258_RS02480 (NCTC13519_00502) - 542133..542471 (+) 339 WP_006218735.1 P-II family nitrogen regulator -
  EL258_RS02485 (NCTC13519_00503) amt 542504..543742 (+) 1239 WP_100855155.1 ammonium transporter -
  EL258_RS02490 (NCTC13519_00504) ptsP 543911..545788 (-) 1878 WP_279629465.1 phosphoenolpyruvate--protein phosphotransferase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 52958.10 Da        Isoelectric Point: 8.7080

>NTDB_id=1120741 EL258_RS02470 WP_100855157.1 539421..540953(-) (comM) [Achromobacter spanius strain NCTC13519]
MTLAVLASRALSGMHAHAVRVETHLGPGLPSFNVVGLADTEVRESRERVRAAILNSGFDFPSGRITVNLSPADIPKESGR
FDLPIALGLLLASGQLAAPADGDVAGKLPASDPSLADLVFAGELSLTGALVPVAAPLVIALSVARDAPGATLILPAGSAE
EAAWVPGLRVLSARSLADVAAHAAGAQLLPDAIPKAWPQAPPGPCLSDVRGQAVARRALEVAAAGGHSLLMVGPPGAGKS
MLAARLPGLLPPLSRSQALEAAAVAALAGLPQTLMGEPPFRAPHHSASVAALVGGGSRPRPGEISLAHNGVLFLDELPEY
SRRTLEALREPLEAGRVVIARALHAAQFPARFQLIAAMNPCPCGWRGHPVRACVCRPDQVARYVGKISGPLLDRIDLHVA
LPPSDPESMAGPAGEASSHVSERVRRCRQRQHDRQGKLNAALSGAELDQYCMMQADAQALLFQAMRRLSGSGRALHRALR
VARTVADLEGADVLGACHVAQAVQYRRPGL

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=1120741 EL258_RS02470 WP_100855157.1 539421..540953(-) (comM) [Achromobacter spanius strain NCTC13519]
TTGACGCTTGCCGTACTTGCCAGCCGCGCGCTTAGCGGCATGCATGCGCACGCCGTCCGGGTCGAAACCCATTTGGGCCC
TGGGCTGCCCAGCTTCAACGTCGTGGGGCTTGCCGACACGGAAGTGCGCGAAAGCCGCGAGCGCGTGCGTGCCGCGATTC
TGAACAGCGGATTCGATTTTCCTTCCGGACGAATCACGGTCAATTTGTCGCCGGCCGACATCCCCAAGGAATCGGGGCGA
TTTGATCTGCCCATCGCATTGGGCTTGCTGCTGGCGTCGGGCCAACTGGCCGCGCCCGCCGACGGCGACGTGGCGGGCAA
ACTGCCTGCGTCTGATCCGTCGCTGGCGGATCTGGTGTTTGCGGGCGAGCTATCCCTGACGGGCGCGTTGGTGCCGGTTG
CGGCACCATTGGTCATTGCGTTGAGCGTGGCCCGCGATGCCCCCGGCGCTACGTTGATTTTGCCGGCGGGCAGTGCCGAA
GAGGCTGCCTGGGTGCCGGGCTTGCGTGTCTTGTCGGCGCGCAGTTTGGCCGATGTCGCCGCGCATGCCGCGGGCGCGCA
ATTGCTGCCCGACGCCATCCCGAAGGCATGGCCGCAAGCGCCACCCGGGCCGTGTCTGTCGGATGTACGAGGGCAGGCAG
TCGCCCGGCGGGCGTTGGAAGTCGCCGCTGCGGGCGGGCACAGTTTGCTGATGGTAGGCCCGCCGGGGGCAGGTAAAAGC
ATGCTGGCGGCGCGTTTGCCGGGGCTGCTGCCGCCATTGAGCCGGTCGCAGGCGCTTGAGGCGGCGGCTGTCGCCGCCTT
GGCGGGCTTGCCGCAGACCCTGATGGGCGAGCCGCCATTTCGCGCGCCGCACCATTCCGCCTCCGTTGCCGCCCTGGTGG
GAGGCGGCAGCCGGCCACGCCCCGGCGAGATCAGCCTGGCGCACAATGGCGTGCTGTTCCTGGACGAATTGCCCGAGTAC
AGCCGTCGTACCCTGGAGGCGCTGCGCGAGCCCCTGGAGGCGGGCAGGGTGGTTATCGCCCGGGCATTGCACGCCGCGCA
GTTTCCGGCGCGGTTTCAACTGATCGCCGCGATGAATCCCTGCCCATGCGGTTGGCGCGGGCACCCCGTGCGGGCCTGCG
TGTGCCGGCCGGACCAGGTTGCTCGTTATGTAGGCAAGATATCGGGGCCACTACTGGACCGTATCGATCTGCATGTCGCG
CTGCCGCCGTCGGATCCGGAGTCGATGGCGGGGCCAGCGGGAGAAGCCTCAAGCCATGTCTCCGAGCGTGTGCGGCGATG
TCGTCAGCGTCAGCACGACCGCCAGGGTAAGCTGAACGCCGCATTGAGCGGCGCGGAGCTTGATCAGTACTGCATGATGC
AGGCAGACGCCCAGGCGTTGCTGTTTCAGGCCATGCGTCGTCTGTCCGGATCCGGCCGAGCCTTGCACCGAGCATTGCGG
GTTGCCCGTACGGTCGCCGATCTGGAGGGGGCGGACGTGCTGGGCGCCTGCCATGTCGCGCAGGCGGTCCAGTACCGCCG
GCCGGGTTTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-156)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(206-406)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

47.573

100

0.48
  comM Vibrio campbellii strain DS40M4

47.184

100

0.476
  comM Haemophilus influenzae Rd KW20

45.349

100

0.459
  comM Glaesserella parasuis strain SC1401

44.402

100

0.451
  comM Legionella pneumophila str. Paris

43.954

100

0.449
  comM Legionella pneumophila strain ERS1305867

43.954

100

0.449
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

39.808

100

0.406

Multiple sequence alignment