Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   EL097_RS03075 Genome accession   NZ_LR134293
Coordinates   579017..580240 (-) Length   407 a.a.
NCBI ID   WP_099983153.1    Uniprot ID   -
Organism   Streptococcus canis strain NCTC12191     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 574017..585240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL097_RS03050 (NCTC12191_00599) - 574484..574882 (-) 399 WP_003043743.1 helix-turn-helix domain-containing protein -
  EL097_RS03055 (NCTC12191_00600) - 575010..575201 (-) 192 WP_003043741.1 DUF951 domain-containing protein -
  EL097_RS03060 (NCTC12191_00601) dnaN 575274..576410 (-) 1137 WP_003043739.1 DNA polymerase III subunit beta -
  EL097_RS03065 (NCTC12191_00602) dnaA 576564..577919 (-) 1356 WP_099983154.1 chromosomal replication initiator protein DnaA -
  EL097_RS03070 (NCTC12191_00603) spo0J 578153..578920 (-) 768 WP_003045869.1 ParB/RepB/Spo0J family partition protein Regulator
  EL097_RS03075 (NCTC12191_00604) htrA 579017..580240 (-) 1224 WP_099983153.1 S1C family serine protease Regulator
  EL097_RS03080 (NCTC12191_00605) rlmH 580453..580932 (+) 480 WP_003045866.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  EL097_RS03090 - 581252..582076 (+) 825 Protein_541 DDE-type integrase/transposase/recombinase -
  EL097_RS03095 - 582302..583202 (+) 901 Protein_542 IS30 family transposase -
  EL097_RS03100 (NCTC12191_00611) yaaA 583282..583695 (+) 414 WP_003045861.1 S4 domain-containing protein YaaA -
  EL097_RS03105 (NCTC12191_00612) recF 583697..584800 (+) 1104 WP_003045859.1 DNA replication/repair protein RecF -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 42660.08 Da        Isoelectric Point: 5.7603

>NTDB_id=1120496 EL097_RS03075 WP_099983153.1 579017..580240(-) (htrA) [Streptococcus canis strain NCTC12191]
MPTMKHILKFLGITLIGFLGGILAIVTVNNTSQQSSSTSHSGSATTSKMVFNNTTDTTKAVNVIQNAVVSVINYQDDPSS
SLSNPYIKLFGEDQAKENKDAELTIFSEGSGVIYRKDGNSAYVVTNNHVIDGAKRIEILMADGSKVVGELVGADTYSDLA
VVKISSDKIKTIAEFADSSKLNVGEVAIAIGSPLGTQYANSVTEGIVSSLSRTVTLKNENGETISTNAIQTDAAINPGNS
GGPLINIEGQVIGINSSKISSTPTGNNGNSGAVEGIGFAIPSSDVIKIIKQLETNGEVIRPALGISMVNLNDLSTNALRQ
INIPTSVTSGIVVASVQAGMPATGKLTQYDVITEIDGKAVNSISDLQSNLYGHNINDTIKVTFYRGTAKKKADIKLTKTT
QDLSKAQ

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1120496 EL097_RS03075 WP_099983153.1 579017..580240(-) (htrA) [Streptococcus canis strain NCTC12191]
ATGCCCACTATGAAACATATCTTAAAATTCTTAGGTATTACACTCATCGGATTTTTAGGAGGAATCTTGGCTATTGTTAC
AGTTAATAATACTAGTCAACAATCTTCTTCTACGTCACACTCAGGTAGTGCAACAACCAGTAAAATGGTTTTCAATAATA
CCACTGATACTACAAAAGCTGTTAACGTTATTCAAAATGCAGTGGTATCCGTTATTAATTATCAAGATGATCCTTCTTCA
TCTTTGTCTAATCCTTACATAAAACTTTTTGGAGAGGATCAGGCAAAAGAAAATAAGGATGCTGAACTAACAATTTTTAG
CGAAGGTTCTGGTGTCATTTATCGAAAAGACGGTAATTCTGCCTATGTTGTTACTAATAATCACGTTATTGATGGTGCTA
AGCGCATTGAAATCCTTATGGCTGATGGATCTAAAGTGGTTGGGGAATTAGTCGGCGCTGATACCTATTCTGACTTAGCA
GTTGTCAAAATTTCTTCTGATAAGATTAAAACAATCGCGGAATTTGCTGATTCAAGCAAACTTAATGTTGGAGAAGTAGC
TATTGCTATAGGTAGTCCTTTAGGAACTCAATATGCCAATTCTGTCACCGAAGGGATTGTTTCAAGTCTCAGTCGTACTG
TTACCTTAAAAAATGAAAATGGTGAAACTATTTCAACCAATGCTATTCAAACAGACGCTGCCATTAATCCAGGAAACTCT
GGTGGTCCACTCATTAATATCGAAGGACAAGTCATCGGAATTAATTCAAGTAAAATTTCCTCTACACCAACTGGTAATAA
TGGTAATAGCGGAGCTGTCGAAGGAATCGGCTTTGCTATTCCATCTAGTGATGTTATCAAAATTATCAAGCAATTAGAAA
CCAATGGAGAAGTCATCAGACCTGCCCTTGGTATCTCTATGGTTAACTTAAATGATTTATCAACCAATGCCCTTCGTCAA
ATCAATATTCCAACCAGTGTGACAAGTGGGATTGTAGTCGCTTCTGTTCAAGCTGGCATGCCAGCTACAGGTAAACTTAC
TCAGTACGATGTGATTACCGAAATCGATGGTAAAGCCGTCAACTCAATTAGTGATCTTCAAAGTAATTTATATGGACATA
ACATTAATGATACTATCAAAGTAACCTTTTACAGAGGGACAGCAAAGAAAAAAGCAGACATCAAATTAACGAAGACTACA
CAAGATTTAAGTAAAGCGCAATAA

Domains

Predicted by InterproScan.

Trypsin-like peptidase domain (Trypsin_2)

(109-254)

PDZ domain (PDZ_2)

(301-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.29

99.017

0.607
  htrA Streptococcus mitis NCTC 12261

54.791

100

0.548
  htrA Streptococcus pneumoniae Rx1

54.791

100

0.548
  htrA Streptococcus pneumoniae D39

54.791

100

0.548
  htrA Streptococcus pneumoniae R6

54.791

100

0.548
  htrA Streptococcus pneumoniae TIGR4

54.791

100

0.548
  htrA Streptococcus gordonii str. Challis substr. CH1

55.224

98.771

0.545

Multiple sequence alignment