Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   EL097_RS03070 Genome accession   NZ_LR134293
Coordinates   578153..578920 (-) Length   255 a.a.
NCBI ID   WP_003045869.1    Uniprot ID   -
Organism   Streptococcus canis strain NCTC12191     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 573153..583920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL097_RS03045 (NCTC12191_00598) ychF 573273..574388 (-) 1116 WP_003043745.1 redox-regulated ATPase YchF -
  EL097_RS03050 (NCTC12191_00599) - 574484..574882 (-) 399 WP_003043743.1 helix-turn-helix domain-containing protein -
  EL097_RS03055 (NCTC12191_00600) - 575010..575201 (-) 192 WP_003043741.1 DUF951 domain-containing protein -
  EL097_RS03060 (NCTC12191_00601) dnaN 575274..576410 (-) 1137 WP_003043739.1 DNA polymerase III subunit beta -
  EL097_RS03065 (NCTC12191_00602) dnaA 576564..577919 (-) 1356 WP_099983154.1 chromosomal replication initiator protein DnaA -
  EL097_RS03070 (NCTC12191_00603) spo0J 578153..578920 (-) 768 WP_003045869.1 ParB/RepB/Spo0J family partition protein Regulator
  EL097_RS03075 (NCTC12191_00604) htrA 579017..580240 (-) 1224 WP_099983153.1 S1C family serine protease Regulator
  EL097_RS03080 (NCTC12191_00605) rlmH 580453..580932 (+) 480 WP_003045866.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  EL097_RS03090 - 581252..582076 (+) 825 Protein_541 DDE-type integrase/transposase/recombinase -
  EL097_RS03095 - 582302..583202 (+) 901 Protein_542 IS30 family transposase -
  EL097_RS03100 (NCTC12191_00611) yaaA 583282..583695 (+) 414 WP_003045861.1 S4 domain-containing protein YaaA -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28706.40 Da        Isoelectric Point: 9.9893

>NTDB_id=1120495 EL097_RS03070 WP_003045869.1 578153..578920(-) (spo0J) [Streptococcus canis strain NCTC12191]
MTELLIQIPIEDIVANPYQPRLQFNQKELEDLARSIKANGLIQPIIVRKSDIFGYELVAGERRFKASKIAGLTKVPAIVK
TISALESMQQAIVENLQRADLNAIEEAKAYQLLIDKNKMTHEEVAKYMGKSRPYISNTLRLLQLPDSIQRAVENGDISAG
HARALLAFSNEKEQLLYATKIKNEGMSVRQIEQLVTPKPKKSKNDKDIFVTSLEKQLAKSLGLKATIKLISHQTGHLQLP
FANEDELNRIINKLL

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1120495 EL097_RS03070 WP_003045869.1 578153..578920(-) (spo0J) [Streptococcus canis strain NCTC12191]
ATGACAGAATTATTGATACAAATTCCCATTGAAGATATTGTGGCAAATCCCTATCAGCCAAGACTTCAATTTAATCAAAA
AGAGCTTGAAGACTTAGCAAGGTCAATCAAAGCAAATGGACTTATTCAACCTATTATCGTTCGAAAATCTGATATTTTTG
GTTATGAACTAGTCGCTGGAGAACGACGATTTAAAGCTTCAAAAATAGCAGGACTAACCAAAGTACCAGCTATTGTCAAA
ACAATATCAGCACTTGAAAGCATGCAACAAGCCATTGTTGAAAATTTACAACGAGCTGACCTAAATGCCATCGAAGAAGC
CAAAGCCTACCAGTTACTTATTGACAAAAATAAGATGACTCATGAAGAGGTTGCCAAATATATGGGGAAATCCAGACCCT
ATATTAGCAATACCTTGCGCTTGTTACAACTACCAGATTCTATCCAGAGAGCCGTAGAAAATGGGGACATTAGTGCTGGT
CACGCGCGAGCCTTATTGGCTTTTTCTAATGAAAAAGAACAATTACTATATGCCACTAAAATCAAAAATGAAGGCATGAG
TGTTCGACAAATTGAACAATTGGTTACTCCGAAACCAAAAAAATCAAAAAATGACAAGGATATTTTTGTCACTTCTTTAG
AAAAACAACTCGCCAAATCTCTTGGCTTAAAAGCAACTATTAAGTTGATATCACATCAGACTGGCCACTTGCAATTACCT
TTTGCTAATGAAGATGAACTAAACAGAATTATCAACAAGTTACTTTAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(147-195)

ParB/Sulfiredoxin domain (ParB_N)

(7-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

57.647

100

0.576

Multiple sequence alignment