Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   EL097_RS01040 Genome accession   NZ_LR134293
Coordinates   204309..206288 (-) Length   659 a.a.
NCBI ID   WP_099983240.1    Uniprot ID   -
Organism   Streptococcus canis strain NCTC12191     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 199309..211288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL097_RS01020 (NCTC12191_00200) amiF 199820..200743 (-) 924 WP_003046685.1 ATP-binding cassette domain-containing protein Regulator
  EL097_RS01025 (NCTC12191_00201) amiE 200736..201806 (-) 1071 WP_003046682.1 ABC transporter ATP-binding protein Regulator
  EL097_RS01030 (NCTC12191_00202) amiD 201815..202741 (-) 927 WP_003046679.1 oligopeptide ABC transporter permease OppC Regulator
  EL097_RS01035 (NCTC12191_00203) amiC 202741..204243 (-) 1503 WP_003046676.1 ABC transporter permease Regulator
  EL097_RS01040 (NCTC12191_00204) amiA 204309..206288 (-) 1980 WP_099983240.1 peptide ABC transporter substrate-binding protein Regulator
  EL097_RS01045 (NCTC12191_00205) pbp3 206619..207857 (+) 1239 WP_003046669.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  EL097_RS01050 (NCTC12191_00206) - 208033..209214 (+) 1182 WP_003046666.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EL097_RS01060 (NCTC12191_00207) sufB 209651..211069 (-) 1419 WP_003046659.1 Fe-S cluster assembly protein SufB -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72459.81 Da        Isoelectric Point: 4.9490

>NTDB_id=1120482 EL097_RS01040 WP_099983240.1 204309..206288(-) (amiA) [Streptococcus canis strain NCTC12191]
MKKSRWLATLGVAVLSVSVLAACGSKNASGGSDATKTYKYVFVNDPKSLDYILSNGGGTTDVATQMVDGLLENDKYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAVDGKSEALYVVEDSIKNLKAYKNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNEKFLKSQGKDFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDPGSFYKNFDKGEFTVARLYPNDPTYKSAKKNYADNITYGMLTGDIRHLTWNLNRTSFKNTKK
DPAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVTIGENDFGSEVEKDLATMGDEWKDVN
LDDAQDGFYNPEKAKAEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVIVNVLETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIMSPVDGGSVIQKLGIKAGESKDVVAAAGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDSAVDIPVVALGGTPRVTKAVPFSGAFAWAGAKGPASVYYYKGMKLQDKPVTAKQYEKAKEKWLK
AKAKSNAEYAEKLADHVEK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=1120482 EL097_RS01040 WP_099983240.1 204309..206288(-) (amiA) [Streptococcus canis strain NCTC12191]
ATGAAGAAAAGTAGATGGTTAGCAACTCTAGGTGTTGCGGTATTATCAGTATCCGTTTTAGCAGCCTGCGGTAGTAAAAA
TGCTTCAGGTGGTTCAGATGCGACAAAAACGTACAAATATGTTTTTGTTAATGATCCAAAATCATTGGACTATATTTTGT
CTAATGGTGGCGGAACAACTGATGTGGCAACGCAAATGGTCGATGGTCTTTTGGAAAATGACAAGTATGGTAACTTGGTA
CCATCACTTGCTAAAGATTGGAAAGTTTCAAAAGATGGCCTAACCTATACTTACACCCTTCGTGATGGTGTCTCTTGGTA
CACTGCTGATGGTGAAGAATACGCACCTGTAACAGCAGAAGATTTTGTGACTGGTCTTAAACACGCAGTGGATGGCAAGT
CTGAAGCTTTATATGTTGTTGAAGATTCCATCAAAAACCTAAAAGCTTATAAAAATGGTGAAGTCGATTTCAAAGAGGTT
GGTGTTAAAGCCCTTGACGACAAAACCGTTCAATACACCTTGAACAAACCTGAAAGTTATTGGAACTCCAAAACAACTTA
CAGTGTTCTTTTCCCAGTCAATGAAAAATTCTTGAAATCACAAGGTAAAGATTTTGGAACAACAGACCCATCGTCAATCC
TAGTTAACGGTGCTTACTTCTTGAGTGCCTTCACCTCAAAATCATCTATGGAATTTCATAAAAATGAAAACTACTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCAGACCCAGGCTCTTTCTACAAGAACTTTGA
CAAGGGTGAGTTCACTGTTGCACGACTTTATCCAAATGACCCTACTTACAAATCAGCTAAGAAAAACTATGCTGATAACA
TTACTTATGGCATGTTGACTGGTGATATTCGTCATTTAACATGGAACTTGAACCGTACTTCCTTCAAAAACACTAAGAAA
GACCCTGCACAACAAGATGCTGGTAAGAAAGCTCTTAACAACAAGGACTTCCGTCAAGCTATCCAGTTTGCCTTCGACCG
TGCGTCATTCCAAGCACAAACTGCAGGTCAAGATGCCAAAACAAAAGCCTTACGTAACATGCTTGTGCCACCAACTTTTG
TGACAATTGGGGAAAATGACTTTGGTTCAGAAGTTGAAAAAGACCTTGCTACTATGGGTGATGAGTGGAAAGACGTTAAC
TTAGACGATGCTCAAGATGGATTTTATAATCCAGAAAAAGCAAAAGCTGAGTTTGCAAAAGCCAAAGAAGCTCTTACAGC
TGAAGGGGTAACCTTCCCAGTTCAATTAGATTACCCTGTTGACCAAGCAAACGCAGCAACTGTTCAGGAAGCCCAATCTT
TCAAACAATCCGTTGAAGCATCTCTTGGTAAAGAAAATGTCATTGTCAATGTTCTTGAAACAGAAACCTCAACTCACGAA
GCCCAAGGCTTCTATGCTGAGACCCCAGAACAACAAGACTACGACATCATTTCATCATGGTGGGGTCCAGACTACCAAGA
CCCACGTACCTACCTTGACATCATGAGTCCAGTGGATGGTGGATCTGTTATCCAAAAACTTGGAATTAAAGCAGGTGAAA
GCAAAGATGTTGTGGCAGCTGCAGGCCTTGATACCTACCAAACTTTACTTGATGAAGCAGCAGCGATTACAGACGACAAC
GATGCGCGCTACAAGGCTTACGCAAAAGCACAAGCCTACCTTACTGATAGTGCTGTAGATATTCCAGTTGTGGCATTGGG
TGGCACTCCTCGAGTTACTAAAGCTGTTCCATTTAGCGGTGCCTTTGCCTGGGCAGGTGCTAAAGGTCCTGCTTCTGTAT
ATTATTACAAAGGAATGAAACTTCAAGACAAACCTGTCACAGCAAAACAATACGAAAAAGCAAAAGAAAAATGGTTGAAA
GCAAAGGCTAAGTCAAACGCAGAATATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

51.131

100

0.514
  amiA3 Streptococcus thermophilus LMG 18311

50.528

100

0.508
  amiA3 Streptococcus thermophilus LMD-9

50.226

100

0.505

Multiple sequence alignment