Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   EL097_RS01030 Genome accession   NZ_LR134293
Coordinates   201815..202741 (-) Length   308 a.a.
NCBI ID   WP_003046679.1    Uniprot ID   A0AAV3FQG4
Organism   Streptococcus canis strain NCTC12191     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 196815..207741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL097_RS01005 (NCTC12191_00197) - 197893..198846 (+) 954 WP_003046689.1 IS30 family transposase -
  EL097_RS01015 tnpA 199183..199647 (-) 465 Protein_193 IS200/IS605 family transposase -
  EL097_RS01020 (NCTC12191_00200) amiF 199820..200743 (-) 924 WP_003046685.1 ATP-binding cassette domain-containing protein Regulator
  EL097_RS01025 (NCTC12191_00201) amiE 200736..201806 (-) 1071 WP_003046682.1 ABC transporter ATP-binding protein Regulator
  EL097_RS01030 (NCTC12191_00202) amiD 201815..202741 (-) 927 WP_003046679.1 oligopeptide ABC transporter permease OppC Regulator
  EL097_RS01035 (NCTC12191_00203) amiC 202741..204243 (-) 1503 WP_003046676.1 ABC transporter permease Regulator
  EL097_RS01040 (NCTC12191_00204) amiA 204309..206288 (-) 1980 WP_099983240.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34816.83 Da        Isoelectric Point: 9.2024

>NTDB_id=1120480 EL097_RS01030 WP_003046679.1 201815..202741(-) (amiD) [Streptococcus canis strain NCTC12191]
METIDKSKFRFVERDSRASEVIDAPAYSYWKSVFRQFFSKKSTIFMLMILVTILLMSFIYPMFANYDFGDVSNINDFSKR
YIWPNADYWFGTDKNGQSLFDGVWYGARNSILISVIATLINVTVGVILGAIWGVSKAFDKVMIEIYNVISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1120480 EL097_RS01030 WP_003046679.1 201815..202741(-) (amiD) [Streptococcus canis strain NCTC12191]
ATGGAAACGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTAGAGCCTCCGAAGTAATTGATGCCCCAGCTTA
TTCTTATTGGAAGTCAGTATTCCGTCAATTTTTCTCTAAAAAATCAACGATTTTCATGTTAATGATTTTAGTGACAATTT
TATTGATGAGTTTTATTTACCCAATGTTCGCTAACTATGACTTTGGTGATGTAAGCAATATTAACGACTTTTCAAAACGC
TATATTTGGCCAAATGCTGACTATTGGTTTGGAACAGATAAAAATGGTCAATCCTTATTTGATGGTGTCTGGTATGGTGC
CCGTAACTCTATCTTAATTTCTGTTATTGCAACACTGATTAACGTCACCGTTGGGGTTATTTTAGGTGCTATTTGGGGAG
TCTCCAAAGCATTTGATAAAGTTATGATTGAAATTTATAACGTTATTTCAAATATCCCTTCCATGCTCATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGTTTCTGGAATTTGATTTTAGCTTTCTGTATTACTGGCTGGATTGGTGTTGCCTACTC
CATTCGTGTTCAGATTTTGCGTTACCGTGATTTGGAATATAACCTTGCTAGTCAAACCTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTCCTACCTCAATTGGTTTCAGTTATCATGACCATGTTGTCACAAATGCTACCAGTTTATGTATCC
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACTACCACTCCAAGTCTAGGACGTTTGATTGCTAATTATTC
AAGCAATTTAACAACAAATGCCTACCTCTTCTGGATTCCTTTAGTTACTTTGATTTTAGTATCGTTACCATTGTATATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.377

100

0.734
  amiD Streptococcus thermophilus LMG 18311

72.727

100

0.727
  amiD Streptococcus thermophilus LMD-9

72.727

100

0.727

Multiple sequence alignment