Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   EL097_RS01020 Genome accession   NZ_LR134293
Coordinates   199820..200743 (-) Length   307 a.a.
NCBI ID   WP_003046685.1    Uniprot ID   A0AAV3FQ40
Organism   Streptococcus canis strain NCTC12191     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 197893..199647 199820..200743 flank 173


Gene organization within MGE regions


Location: 197893..200743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL097_RS01005 (NCTC12191_00197) - 197893..198846 (+) 954 WP_003046689.1 IS30 family transposase -
  EL097_RS01015 tnpA 199183..199647 (-) 465 Protein_193 IS200/IS605 family transposase -
  EL097_RS01020 (NCTC12191_00200) amiF 199820..200743 (-) 924 WP_003046685.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34680.94 Da        Isoelectric Point: 7.1461

>NTDB_id=1120478 EL097_RS01020 WP_003046685.1 199820..200743(-) (amiF) [Streptococcus canis strain NCTC12191]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGQILYDGKVINGRKSKS
DANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKTMMTEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERQKELVVYNPDQHDYTVDKPSMVEIKPNHFVWANQAEIKKYQKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1120478 EL097_RS01020 WP_003046685.1 199820..200743(-) (amiF) [Streptococcus canis strain NCTC12191]
ATGTCTGAGAAGTTAGTCGAAGTTAAAGACCTAGAAATTTCCTTCGGAGAGGGAAAGAAAAAATTTGTTGCGGTTAAGAA
TGCCAATTTCTTCATTAAAAAAGGGGAAACCTTCTCTTTAGTTGGAGAATCTGGTAGCGGAAAAACAACTATTGGTCGGG
CCATTATTGGCTTGAATGATACCAGTTCAGGGCAAATTCTTTACGATGGTAAAGTAATTAATGGTAGAAAATCCAAATCA
GATGCCAATGAGCTGATACGTAAAATTCAAATGATTTTCCAAGATCCTGCTGCTAGTTTAAATGAACGTGCAACTGTTGA
TTATATCATTTCGGAAGGTCTCTATAACTTTAATCTGTTTAAAACAGAGGAAGAACGTAAAGAAAAAATTAAGACGATGA
TGACTGAAGTTGGCCTGCTGTCAGAGCATCTGACTCGCTACCCACATGAATTTTCGGGAGGTCAACGCCAGCGGATTGGT
ATTGCCAGAGCCTTAGTGATGAATCCTGAATTCGTTATTGCTGATGAGCCTATCTCAGCTTTAGATGTCTCTGTTCGAGC
ACAAGTCCTAAATCTTCTTAAAAGAATGCAGGCAGAAAAAGGGCTCACTTATCTTTTCATCGCCCATGACCTTTCCGTTG
TTCGATTCATTTCAGATCGTATTGCGGTTATTCATAAAGGGGTTATTGTGGAGGTTGCAGAAACAGAAGAATTATTTAAT
AATCCTATCCATCCTTACACAAAATCTCTGCTGTCAGCCGTTCCTATTCCTGATCCGATTTTAGAACGTCAAAAAGAACT
TGTTGTTTATAATCCAGATCAGCATGATTATACCGTAGATAAGCCATCAATGGTTGAAATCAAACCAAATCACTTTGTTT
GGGCAAACCAAGCAGAAATTAAAAAGTATCAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

82.353

99.674

0.821
  amiF Streptococcus thermophilus LMD-9

82.026

99.674

0.818
  amiF Streptococcus salivarius strain HSISS4

82.026

99.674

0.818

Multiple sequence alignment