Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   EL097_RS01035 Genome accession   NZ_LR134293
Coordinates   202741..204243 (-) Length   500 a.a.
NCBI ID   WP_003046676.1    Uniprot ID   -
Organism   Streptococcus canis strain NCTC12191     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 197741..209243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL097_RS01005 (NCTC12191_00197) - 197893..198846 (+) 954 WP_003046689.1 IS30 family transposase -
  EL097_RS01015 tnpA 199183..199647 (-) 465 Protein_193 IS200/IS605 family transposase -
  EL097_RS01020 (NCTC12191_00200) amiF 199820..200743 (-) 924 WP_003046685.1 ATP-binding cassette domain-containing protein Regulator
  EL097_RS01025 (NCTC12191_00201) amiE 200736..201806 (-) 1071 WP_003046682.1 ABC transporter ATP-binding protein Regulator
  EL097_RS01030 (NCTC12191_00202) amiD 201815..202741 (-) 927 WP_003046679.1 oligopeptide ABC transporter permease OppC Regulator
  EL097_RS01035 (NCTC12191_00203) amiC 202741..204243 (-) 1503 WP_003046676.1 ABC transporter permease Regulator
  EL097_RS01040 (NCTC12191_00204) amiA 204309..206288 (-) 1980 WP_099983240.1 peptide ABC transporter substrate-binding protein Regulator
  EL097_RS01045 (NCTC12191_00205) pbp3 206619..207857 (+) 1239 WP_003046669.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  EL097_RS01050 (NCTC12191_00206) - 208033..209214 (+) 1182 WP_003046666.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56124.32 Da        Isoelectric Point: 10.1038

>NTDB_id=1120481 EL097_RS01035 WP_003046676.1 202741..204243(-) (amiC) [Streptococcus canis strain NCTC12191]
MKKYILNRILRSLVSVVLVTALTYTIVYTLVPVGLIFKQDPNYNKMTTTPDKKADYENLTFQRMGYINYFSSKELKDNAS
KVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPVSKKFYATRHIPIYERVWNFFSNLVVIDHPWKIQDEDNPNLARYI
RLENDKSIGWALVGSGTQHKYLVYANGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGSMVGLPDSFPMLGASNPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGIPASIILTIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIISLLLG
DIAMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=1120481 EL097_RS01035 WP_003046676.1 202741..204243(-) (amiC) [Streptococcus canis strain NCTC12191]
ATGAAAAAATACATCTTAAACCGTATCTTACGATCGTTAGTGTCGGTAGTTTTGGTAACGGCCTTAACATACACCATCGT
ATATACTCTAGTCCCTGTCGGTCTTATCTTTAAACAAGATCCTAACTACAATAAGATGACGACGACGCCAGACAAAAAGG
CTGATTACGAAAACTTAACCTTCCAACGTATGGGGTATATTAATTACTTTTCAAGCAAAGAATTGAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACAACAGAAGCCACTAGTGCTAACAAGGCTATTTATGAGAAATATATTGATTCGCTTGGCAA
TGGTTGGCAGTTAAAACGCTTCCCTGTCAGCAAAAAATTTTATGCTACTCGTCATATTCCTATTTACGAACGTGTTTGGA
ACTTCTTCTCAAACCTAGTTGTTATTGACCACCCTTGGAAGATCCAAGACGAGGACAATCCTAATTTAGCCAGATATATT
CGTCTTGAAAATGATAAATCGATTGGTTGGGCTTTAGTGGGGTCAGGGACACAACACAAATACCTTGTCTATGCTAACGG
TAAGTTTCCTTATCTTCACCAAAACTTCGTTACCCTAAACTTAGGAACATCTTACCCAACATACAGTAACATTCCAGTTC
TTCAAGTCATTTCACAAGGACAAGGTCGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTAACTAAGAAATCGTCA
GTGGATATTTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATTACCAAGGTAAATTATGGTAAGGGAGATTC
CTACACTAAAACTATTAATAATTATGTGGATCCTTCAATGATTCATAATTCATTTGTTATTGGATTCTTTGGCGTTATGT
TTTCCTATATTGTTGGTTTACCACTTGGTTTATTTATGGCTCGCTTTAAAAATACCTACTTTGACCGTTTTTCAACAGCA
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTGATCTATGTTGTTCGCTTCCTAGGAAGCATGGTTGGTTTACC
AGATAGTTTCCCAATGCTTGGAGCATCTAACCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACAGTTATCTGGTTCCGTCGCTACCTTGTTGACCTTCAGGCCAGTGACTGGGTGCGTTTTGCGCGCTCAAAAGGG
TTGTCAGAATCTGAAATTTACAGAGGGCATCTCTTTAAAAATGCTATGGTCCCAATTGTGTCAGGGATTCCGGCAAGTAT
TATTCTTACCATCGGTGGAGCAACCTTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTGATTGATTCTA
TTAAATCAGCCAACAACTCAATGATTGTTGGATTAACCTTTATCTTTACCGTCTTGTCAATTATCTCACTCTTACTAGGA
GATATTGCTATGACACTTGTCGATCCACGTATTAAATTATCAACTAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

60.2

100

0.602
  amiC Streptococcus thermophilus LMD-9

59.8

100

0.598
  amiC Streptococcus thermophilus LMG 18311

59.8

100

0.598

Multiple sequence alignment