Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   EL092_RS08560 Genome accession   NZ_LR134291
Coordinates   1777683..1779665 (-) Length   660 a.a.
NCBI ID   WP_012130758.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7868     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1772683..1784665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL092_RS08545 (NCTC7868_01707) amiD 1772925..1773851 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  EL092_RS08550 (NCTC7868_01708) amiC 1773851..1775347 (-) 1497 WP_008809624.1 ABC transporter permease Regulator
  EL092_RS08555 (NCTC7868_01709) amiA 1775412..1777403 (-) 1992 WP_012130757.1 peptide ABC transporter substrate-binding protein Regulator
  EL092_RS08560 (NCTC7868_01710) amiA 1777683..1779665 (-) 1983 WP_012130758.1 peptide ABC transporter substrate-binding protein Regulator
  EL092_RS08565 (NCTC7868_01711) amiA 1779916..1781874 (-) 1959 WP_012130760.1 peptide ABC transporter substrate-binding protein Regulator
  EL092_RS08570 (NCTC7868_01712) amiA 1782091..1784052 (-) 1962 WP_012130761.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73522.95 Da        Isoelectric Point: 5.0817

>NTDB_id=1120377 EL092_RS08560 WP_012130758.1 1777683..1779665(-) (amiA) [Streptococcus gordonii strain NCTC7868]
MKKRNVLAMAGVTLLAVGVLAACSSSKSGSSNTNTNFTYVYQTDPETLDYTLSSKTSTHEITSNVIDGLLENDQYGNLVP
SLAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYADVTAKDFVTGLKHAVDKKSEALYMVENSIKGLDAYIKGETKDFSTV
GIKAVDDHTLQFTLEHPESFWNSKLTMGVLFPVNEEFLKSKGDKFGQATDPTSILYNGPFLLKGITSKSSIEFAKNQNYW
DKDNVHVDNVKLAFYDGQDQESLIRGFKDGSYSKARVYPRSSNYASVEKEYKDNIIFSPQGSSTFTVFTNIDRQSYNHTS
KTTDAQKTSTKKAILNKDFRQALNFAYDRKAYSDQVNGEEGALKSIRNLYVPPTFVQVGDKNFGDVVKEDVVKYGDEWKD
VDFSDATNGLYNPEKAKAEFAKAKEALQAEGVEFPIHLDIPTIQTNTLIVKRAQSLKQSIEKSLGTDNVVVDIQMLSQED
VNNITYYAPNAAALDWDITDQLGWTPDFQDPSSYLEILHPETGDNTKSFLGFEAGSGNAAAKQIGMDEFGKLLDEAAAEK
TDTTKRYEKYAAAQAWLTDSSILLPSTSNGGGAGVTRVVPFTAAFGWTGNKSDGAFLYKYIKLQDKPVTKKEYQEAEKKW
IKEKEESNKKAQEELEKHIK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=1120377 EL092_RS08560 WP_012130758.1 1777683..1779665(-) (amiA) [Streptococcus gordonii strain NCTC7868]
ATGAAGAAACGCAATGTTTTAGCCATGGCTGGTGTTACTTTACTTGCTGTTGGTGTCTTAGCTGCCTGCTCTAGTTCTAA
GTCTGGGTCATCAAACACAAATACTAATTTTACTTATGTTTATCAAACAGACCCAGAAACTTTGGACTATACCTTGTCAA
GTAAGACCTCTACCCACGAAATCACATCTAATGTCATTGATGGTTTGCTTGAAAATGACCAATATGGTAATCTTGTTCCA
TCTCTTGCAGAAGACTGGAGTGTATCTAAGGACGGCTTGACTTACACTTACAAATTGCGTAAGGGAGTTAAATGGTATAC
ATCCGATGGCGAAGAATATGCAGATGTAACTGCTAAGGATTTTGTGACAGGTTTGAAACATGCTGTAGATAAAAAGTCAG
AAGCTCTTTATATGGTGGAAAATTCCATCAAAGGATTGGATGCCTATATCAAAGGGGAAACAAAGGACTTCTCAACAGTA
GGGATTAAAGCTGTCGATGATCATACCTTGCAGTTCACTTTGGAACATCCAGAAAGCTTCTGGAATTCTAAATTAACAAT
GGGTGTCCTATTCCCTGTTAATGAAGAGTTCTTGAAATCTAAAGGAGACAAATTCGGTCAAGCTACTGACCCGACAAGTA
TCCTTTATAATGGTCCTTTCTTGTTGAAAGGTATAACTTCGAAGTCCTCTATCGAGTTTGCGAAAAATCAGAACTATTGG
GATAAGGATAATGTCCATGTCGACAATGTTAAATTAGCTTTCTATGATGGACAAGACCAAGAATCCTTAATTCGTGGCTT
TAAAGACGGCTCTTATAGTAAGGCGCGTGTTTATCCTCGTAGTTCAAACTATGCGTCTGTAGAGAAAGAATATAAAGATA
ATATTATCTTTAGTCCTCAAGGTTCATCTACTTTCACTGTTTTCACAAACATTGATCGCCAAAGTTATAATCATACTTCT
AAAACGACAGATGCACAAAAAACATCTACCAAAAAAGCTATCTTAAACAAAGACTTCCGTCAGGCTTTGAACTTTGCTTA
TGACCGTAAGGCCTATTCTGACCAAGTGAACGGTGAAGAGGGAGCCCTTAAATCTATTCGTAACCTCTATGTCCCACCAA
CATTTGTTCAAGTTGGTGATAAGAATTTTGGAGATGTCGTAAAAGAAGATGTTGTCAAATACGGCGATGAGTGGAAAGAT
GTTGATTTCTCAGATGCGACTAACGGTCTCTACAATCCAGAGAAAGCCAAAGCGGAATTCGCCAAAGCAAAAGAAGCCCT
TCAAGCAGAAGGCGTAGAATTCCCAATTCATCTGGACATACCAACAATCCAGACCAATACTCTTATTGTAAAACGGGCTC
AATCTTTGAAACAGTCTATTGAAAAGAGTTTAGGAACAGACAATGTTGTGGTTGATATTCAAATGTTATCCCAAGAAGAT
GTTAATAATATAACTTACTACGCTCCAAATGCAGCTGCTTTGGATTGGGATATCACAGACCAACTTGGCTGGACTCCTGA
CTTCCAAGATCCGTCATCCTATTTAGAGATTCTACACCCAGAAACAGGTGATAACACGAAGTCTTTCCTTGGATTTGAAG
CTGGTAGTGGAAATGCTGCTGCTAAACAAATCGGCATGGATGAATTTGGAAAATTGTTGGATGAAGCTGCTGCTGAAAAG
ACAGATACAACAAAACGCTATGAAAAATATGCAGCTGCTCAAGCTTGGTTGACAGATAGTTCGATCTTACTTCCAAGCAC
TTCAAATGGTGGAGGAGCTGGTGTAACTAGGGTTGTACCATTCACTGCTGCTTTTGGTTGGACAGGTAACAAATCAGATG
GTGCCTTCCTCTACAAATACATCAAGCTTCAAGATAAACCAGTAACGAAGAAAGAGTATCAAGAAGCTGAGAAGAAATGG
ATTAAAGAAAAAGAAGAATCTAACAAAAAAGCTCAAGAAGAACTTGAGAAGCATATAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.817

100

0.609
  amiA3 Streptococcus thermophilus LMD-9

59.909

100

0.6
  amiA3 Streptococcus thermophilus LMG 18311

59.758

100

0.598

Multiple sequence alignment