Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   EL092_RS08555 Genome accession   NZ_LR134291
Coordinates   1775412..1777403 (-) Length   663 a.a.
NCBI ID   WP_012130757.1    Uniprot ID   P31306
Organism   Streptococcus gordonii strain NCTC7868     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1770412..1782403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL092_RS08535 (NCTC7868_01705) amiF 1770915..1771838 (-) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  EL092_RS08540 (NCTC7868_01706) amiE 1771849..1772916 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  EL092_RS08545 (NCTC7868_01707) amiD 1772925..1773851 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  EL092_RS08550 (NCTC7868_01708) amiC 1773851..1775347 (-) 1497 WP_008809624.1 ABC transporter permease Regulator
  EL092_RS08555 (NCTC7868_01709) amiA 1775412..1777403 (-) 1992 WP_012130757.1 peptide ABC transporter substrate-binding protein Regulator
  EL092_RS08560 (NCTC7868_01710) amiA 1777683..1779665 (-) 1983 WP_012130758.1 peptide ABC transporter substrate-binding protein Regulator
  EL092_RS08565 (NCTC7868_01711) amiA 1779916..1781874 (-) 1959 WP_012130760.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 73370.79 Da        Isoelectric Point: 5.0247

>NTDB_id=1120376 EL092_RS08555 WP_012130757.1 1775412..1777403(-) (amiA) [Streptococcus gordonii strain NCTC7868]
MKKGKILALAGVALLATGVLAACSNSTSNSSNSSSSGADQVFNYIYEVDPENLNYLISSKAATTDLTANLIDGLLENDNY
GNLVPSMAEDWTVSKDGLTYTYTLRKDAKWYTSDGEEYADVKAQDFVAGLKYAADNKSETLYLVQSSIKGLDDYVNGKTK
DFSSVGVKAVDDHTVQYTLNEPESFWNSKTTMGILYPVNEEFLKSKGDKFAQSADPTSLLYNGPFLLKSITSKSSIEFAK
NPNYWDKDNVHVSDVKLTYFDGQDQGKPAEQFAKGALSAARLAPTSATFSKVEKEFKDNIVYTPQDSTSYLVGVNIDRQA
YNHTAKSSDAQKSSTKKALMNKDFRQALSFAFDRTAYASQVNGKEGATKMLRNLYIPPTFVQADGKSFGELVKEKVASYG
DEWKDVNFDDAQDGLYNKEKAKAEFAKAKKALQEEGVEFPIHLDMPVDQTATAKVQRVQSLKQSIESSLGTDNVVVDIHQ
MKTDDVLNITYYAASAAEEDWDISDNVGWSPDYQDPSTYLEIIKPGGENTKTFLGFDGKENAAAEQVGLKEYAKLVDEAA
AEKTDVNKRYEKYATAQAWLTDSALLIPTTSRTGRPVLTKIVPFTAPFAWSGAKGRDMASYKYLKLQDKAVTAKEYQKAQ
EKWNKERAESNKKAQEELEKHVK

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=1120376 EL092_RS08555 WP_012130757.1 1775412..1777403(-) (amiA) [Streptococcus gordonii strain NCTC7868]
ATGAAGAAAGGTAAAATCCTTGCACTTGCGGGAGTTGCTCTCTTGGCTACTGGCGTTCTTGCAGCGTGCTCAAATTCTAC
ATCAAACTCATCAAACTCATCAAGCTCTGGCGCAGATCAAGTTTTTAACTATATCTACGAAGTTGATCCAGAAAACTTGA
ATTATTTGATCTCTAGTAAAGCAGCAACAACTGACCTTACAGCTAACTTGATCGATGGTCTTTTAGAAAATGACAACTAT
GGAAACTTGGTTCCATCGATGGCTGAAGATTGGACAGTGTCTAAGGATGGCTTGACTTATACTTATACACTTCGTAAGGA
TGCTAAATGGTATACTTCTGATGGTGAAGAGTATGCTGATGTCAAGGCCCAAGACTTTGTGGCAGGTCTAAAGTACGCTG
CTGACAACAAGTCTGAAACTCTTTATCTTGTTCAAAGTTCTATCAAGGGCTTGGATGACTACGTTAATGGTAAAACAAAG
GATTTCTCATCAGTTGGTGTTAAAGCAGTTGATGACCACACAGTTCAATATACTTTAAATGAGCCAGAAAGTTTCTGGAA
CTCTAAAACAACAATGGGTATCCTTTATCCAGTCAATGAAGAGTTCTTGAAGTCTAAAGGTGACAAGTTTGCTCAATCTG
CTGACCCAACTAGTCTTCTATACAACGGGCCATTCCTACTTAAATCTATCACATCTAAATCATCTATTGAATTTGCTAAA
AATCCAAATTACTGGGATAAAGATAATGTCCATGTGAGCGATGTTAAATTAACATATTTTGATGGGCAAGATCAAGGTAA
ACCAGCTGAGCAATTTGCTAAAGGTGCTCTCAGTGCAGCTAGACTAGCTCCTACAAGTGCTACCTTCTCTAAAGTCGAAA
AAGAATTCAAAGATAATATCGTTTATACTCCTCAAGATTCTACGAGCTATTTAGTTGGGGTGAACATTGATCGTCAAGCG
TACAATCACACAGCTAAATCAAGTGATGCACAAAAATCATCAACAAAGAAAGCTTTGATGAACAAAGATTTCCGTCAAGC
TTTGAGTTTTGCATTCGACAGAACGGCTTATGCTTCACAAGTTAATGGTAAAGAAGGGGCTACGAAAATGCTCCGCAATC
TCTACATTCCACCTACTTTTGTTCAGGCAGATGGTAAGAGCTTCGGCGAACTTGTGAAAGAAAAAGTGGCTAGCTATGGA
GATGAGTGGAAAGATGTAAACTTCGACGATGCTCAAGATGGCCTTTACAATAAGGAAAAAGCAAAGGCTGAATTTGCGAA
AGCTAAAAAAGCTCTTCAAGAAGAAGGTGTAGAATTCCCTATTCATTTGGATATGCCAGTAGACCAAACTGCTACTGCTA
AAGTTCAGCGTGTTCAATCTTTGAAACAATCAATTGAGAGCTCGCTTGGGACAGACAATGTGGTTGTTGACATTCATCAA
ATGAAGACTGATGATGTTTTGAACATCACCTATTATGCTGCTTCAGCTGCCGAAGAAGATTGGGATATTTCTGATAATGT
TGGTTGGTCTCCTGACTATCAAGATCCATCAACTTATCTTGAAATTATCAAGCCTGGCGGTGAAAACACCAAAACATTCT
TAGGGTTTGATGGTAAAGAAAATGCAGCTGCAGAACAAGTTGGTTTGAAGGAGTATGCTAAGCTGGTTGATGAAGCTGCC
GCTGAAAAGACAGATGTAAATAAACGCTATGAAAAATATGCAACTGCTCAAGCATGGCTAACAGATAGCGCCTTGTTGAT
ACCAACAACAAGTAGGACTGGACGTCCAGTTTTAACTAAGATTGTACCATTTACAGCTCCTTTTGCTTGGTCTGGTGCTA
AAGGTCGTGACATGGCAAGTTACAAATATCTGAAATTACAAGATAAAGCTGTCACAGCCAAAGAATATCAGAAAGCTCAA
GAAAAATGGAATAAAGAACGTGCAGAATCTAATAAAAAAGCACAAGAAGAGTTAGAAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(83-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P31306

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.301

100

0.605
  amiA3 Streptococcus thermophilus LMD-9

59.549

100

0.597
  amiA3 Streptococcus thermophilus LMG 18311

59.098

100

0.593

Multiple sequence alignment