Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   EL092_RS08545 Genome accession   NZ_LR134291
Coordinates   1772925..1773851 (-) Length   308 a.a.
NCBI ID   WP_008809623.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7868     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1767925..1778851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL092_RS08530 (NCTC7868_01704) comR/comR2 1770231..1770713 (-) 483 WP_012130755.1 sigma-70 family RNA polymerase sigma factor Regulator
  EL092_RS08535 (NCTC7868_01705) amiF 1770915..1771838 (-) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  EL092_RS08540 (NCTC7868_01706) amiE 1771849..1772916 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  EL092_RS08545 (NCTC7868_01707) amiD 1772925..1773851 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  EL092_RS08550 (NCTC7868_01708) amiC 1773851..1775347 (-) 1497 WP_008809624.1 ABC transporter permease Regulator
  EL092_RS08555 (NCTC7868_01709) amiA 1775412..1777403 (-) 1992 WP_012130757.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34645.61 Da        Isoelectric Point: 9.7223

>NTDB_id=1120374 EL092_RS08545 WP_008809623.1 1772925..1773851(-) (amiD) [Streptococcus gordonii strain NCTC7868]
MASIDKNKFQFVKRDDFASEAIDAPAYSYWRSVIRQFLKKKSTIIMLAILLTIILMSFIYPMLSDFDYNDVSKVNDFSAR
YIAPNGKYWFGTDSNGKSLFDGVWFGARNSILISVIATAINLIIGIVVGGIWGISKSVDRVMMEVYNVISNIPQLLIVIV
LTYSIGAGFWNLIFAMTITSWISIAYLIRVQIMRYRDLEYNLASRTLGTSTFKIVARNIMPQLVSVIMTTSSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1120374 EL092_RS08545 WP_008809623.1 1772925..1773851(-) (amiD) [Streptococcus gordonii strain NCTC7868]
ATGGCTTCTATTGATAAAAATAAATTCCAATTTGTCAAACGCGATGATTTTGCCTCTGAAGCAATTGATGCTCCGGCCTA
TTCATACTGGAGATCTGTTATTCGCCAATTTCTGAAGAAGAAATCTACCATTATTATGTTGGCGATTTTGCTAACCATTA
TTTTAATGAGTTTTATTTACCCGATGTTGTCTGACTTTGATTATAACGATGTAAGTAAAGTTAATGACTTTAGTGCTCGT
TATATTGCGCCAAATGGGAAATATTGGTTTGGTACAGATAGCAATGGTAAATCTCTTTTTGATGGAGTATGGTTTGGTGC
TCGTAATTCTATCTTGATTTCCGTTATTGCGACAGCCATTAACTTGATCATTGGGATTGTTGTTGGTGGTATTTGGGGGA
TTTCCAAATCAGTTGACCGCGTTATGATGGAAGTCTATAACGTTATCTCAAATATTCCGCAATTGTTGATCGTTATTGTT
TTGACTTATTCAATCGGGGCCGGATTCTGGAATCTAATCTTTGCCATGACAATTACTTCATGGATTTCGATTGCTTACTT
AATTCGTGTACAAATCATGCGGTATCGTGATTTAGAGTACAACCTTGCCAGCCGTACTTTGGGAACGTCTACTTTTAAAA
TTGTTGCTCGAAACATTATGCCACAATTGGTATCTGTGATCATGACGACTAGCTCTCAAATGCTTCCAAGCTTTATCTCT
TATGAAGCCTTCCTTTCTTTCTTTGGTTTGGGGCTTCCAGTCACTGTGCCAAGTTTAGGGCGTTTGATTTCTGACTATTC
ACAAAACGTTACAACTAATGCTTACCTTTTCTGGATTCCATTGACAACCTTGATTTTGGTATCCTTGTCCCTTTTCATCG
TCGGACAAAATTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.143

100

0.821
  amiD Streptococcus thermophilus LMG 18311

81.169

100

0.812
  amiD Streptococcus thermophilus LMD-9

81.169

100

0.812

Multiple sequence alignment