Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   EL092_RS08565 Genome accession   NZ_LR134291
Coordinates   1779916..1781874 (-) Length   652 a.a.
NCBI ID   WP_012130760.1    Uniprot ID   A8AYX7
Organism   Streptococcus gordonii strain NCTC7868     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1774916..1786874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL092_RS08555 (NCTC7868_01709) amiA 1775412..1777403 (-) 1992 WP_012130757.1 peptide ABC transporter substrate-binding protein Regulator
  EL092_RS08560 (NCTC7868_01710) amiA 1777683..1779665 (-) 1983 WP_012130758.1 peptide ABC transporter substrate-binding protein Regulator
  EL092_RS08565 (NCTC7868_01711) amiA 1779916..1781874 (-) 1959 WP_012130760.1 peptide ABC transporter substrate-binding protein Regulator
  EL092_RS08570 (NCTC7868_01712) amiA 1782091..1784052 (-) 1962 WP_012130761.1 peptide ABC transporter substrate-binding protein Regulator
  EL092_RS08575 (NCTC7868_01713) pbp3 1784342..1785580 (+) 1239 WP_012130762.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72315.06 Da        Isoelectric Point: 4.9653

>NTDB_id=1120378 EL092_RS08565 WP_012130760.1 1779916..1781874(-) (amiA) [Streptococcus gordonii strain NCTC7868]
MNKKKRFVGVGLAVLSSVILAACSSTASNTKVYSYVYSNDPDSLDYVVANRATTSDVTGNLIDGLLENDKYGNLIPSLAE
DWTVSKDGLTYTYKLRKDAKWYTSDGEEYAEVKAQDFVTGLKHAADGKSEALYLVQNSIKGLDAYIKGETKDFSTVGVKA
LDDYTVQYTLNKPESYWNSKTTSGILFPINADFLASQGSSFGSAKPSSILYNGPYILKSLTAKSSIEYKKNENYWDKENV
PIEDVKLSYYDGSDQESLVRNFSDGAYTLARVFPNSSNYASVKKKYADNITYSQQGGTSFFYVFNVNRQSYNHTSKKDDK
QKSDTKVAILNKDFRQAIGFAFDRKAYAAQTNGEDGASMILRNLAVPPTFVQIKDRNFGDVVKEKLASYGQEWSDVKLED
AQDGLYNAEKAKAEFAKAKETLQAQGVNFPIHLDLPVSQSDKAGIQQASSFKQSVESALGKDNVVVDLQQMSEDDFNNTG
YFANSAAQKDYDLSTSGWTPDYQDPSTYLDVFDPTNGGLLQAIGIEPGQNQDVVSALGLNDYKALNDDANKETSDTSVRY
EKYANSQAWLTDSGLTLPSISNGANPLVQKSVPFTRAYSWIGSKGTATNYKYMQLQDDVLTSKDYEKAFKTWMKEKESSN
EKAQKELEKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1120378 EL092_RS08565 WP_012130760.1 1779916..1781874(-) (amiA) [Streptococcus gordonii strain NCTC7868]
ATGAATAAGAAAAAAAGATTTGTTGGAGTTGGACTTGCAGTTTTATCTTCTGTGATTTTAGCTGCTTGTAGTTCAACAGC
ATCTAATACAAAGGTGTATTCTTATGTATATAGTAATGATCCAGATTCTTTGGACTATGTAGTTGCTAATCGTGCTACCA
CTTCAGATGTGACTGGAAATCTGATTGATGGTTTGCTTGAAAATGATAAGTATGGGAATTTGATTCCGTCTCTTGCTGAA
GATTGGACCGTATCTAAGGATGGTTTGACCTATACTTACAAGCTTCGAAAAGATGCTAAGTGGTATACCTCAGATGGCGA
AGAGTATGCTGAGGTAAAAGCTCAAGATTTTGTGACAGGATTGAAGCACGCAGCCGATGGCAAATCTGAAGCTCTTTACC
TTGTTCAAAATTCTATCAAAGGATTGGATGCCTATATCAAAGGGGAAACTAAAGACTTTTCTACTGTAGGTGTAAAAGCG
CTGGATGATTATACAGTGCAGTATACTTTGAATAAACCAGAAAGTTACTGGAATTCGAAGACGACTAGTGGTATCTTATT
CCCGATAAATGCTGATTTCTTAGCTTCTCAAGGAAGTAGTTTTGGTTCGGCTAAACCGTCTAGTATTTTGTACAATGGTC
CTTATATTTTGAAGTCTTTAACGGCAAAATCTTCTATTGAGTATAAGAAAAACGAAAATTATTGGGATAAAGAAAATGTT
CCGATTGAAGATGTAAAACTATCTTATTATGATGGATCCGATCAAGAATCCTTAGTTCGTAATTTTAGCGATGGTGCTTA
TACCCTGGCTCGTGTATTCCCAAATAGTTCGAACTATGCCTCTGTTAAAAAGAAATATGCGGATAATATTACTTATTCTC
AACAAGGTGGAACTTCATTTTTCTATGTCTTTAATGTAAATCGTCAGTCTTATAATCATACTTCTAAGAAAGACGACAAG
CAAAAATCAGATACCAAGGTTGCTATTTTAAACAAAGATTTCCGTCAGGCAATCGGTTTTGCCTTTGACCGAAAAGCTTA
CGCAGCTCAAACGAATGGCGAAGACGGAGCATCAATGATCTTGCGCAATCTTGCAGTACCACCGACATTTGTGCAGATTA
AGGATCGGAATTTTGGAGATGTCGTGAAAGAAAAACTAGCGAGCTACGGTCAAGAGTGGTCTGATGTCAAGTTAGAGGAT
GCCCAAGACGGTCTATATAATGCTGAAAAAGCTAAAGCAGAGTTTGCAAAAGCAAAAGAAACCCTGCAGGCTCAAGGCGT
AAATTTCCCGATTCATCTAGATTTGCCAGTGAGTCAGTCTGATAAGGCTGGAATCCAACAAGCTAGTTCCTTTAAGCAGT
CTGTTGAGTCAGCGCTTGGAAAGGACAATGTAGTAGTTGATCTCCAACAGATGTCCGAAGATGACTTTAATAATACGGGT
TATTTCGCCAACTCGGCTGCTCAAAAAGATTATGATCTTTCAACCAGTGGTTGGACTCCCGATTATCAAGATCCTTCTAC
ATATTTAGATGTTTTTGATCCGACAAATGGTGGATTATTGCAAGCGATTGGAATTGAACCGGGTCAAAATCAAGATGTTG
TGTCAGCTCTAGGATTAAATGATTATAAAGCTCTGAATGATGATGCTAATAAGGAAACGTCTGATACGAGTGTGCGTTAT
GAAAAATATGCAAATTCTCAAGCATGGTTGACAGATAGTGGTTTGACCCTTCCAAGTATCTCAAACGGTGCTAATCCGCT
GGTGCAAAAATCAGTTCCATTTACTAGAGCCTACTCTTGGATTGGAAGTAAGGGGACAGCTACAAATTATAAATACATGC
AGCTTCAAGACGATGTCTTGACTTCTAAGGATTATGAGAAGGCATTTAAAACTTGGATGAAAGAAAAAGAATCATCTAAT
GAAAAAGCTCAAAAAGAGTTAGAAAAACATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AYX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

58.689

100

0.59
  amiA3 Streptococcus thermophilus LMD-9

58.447

100

0.589
  amiA3 Streptococcus thermophilus LMG 18311

58.143

100

0.586

Multiple sequence alignment