Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | EL087_RS01025 | Genome accession | NZ_LR134288 |
| Coordinates | 191884..192837 (+) | Length | 317 a.a. |
| NCBI ID | WP_003039058.1 | Uniprot ID | A0AAD2T9U9 |
| Organism | Streptococcus milleri strain NCTC11169 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 186884..197837
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL087_RS00985 (NCTC11169_00192) | - | 187777..188142 (+) | 366 | WP_126406228.1 | DUF1033 family protein | - |
| EL087_RS00990 (NCTC11169_00193) | comYA | 188212..189153 (+) | 942 | WP_126406231.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EL087_RS00995 (NCTC11169_00194) | comYB | 189095..190117 (+) | 1023 | WP_182465780.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| EL087_RS01000 (NCTC11169_00195) | comYC | 190114..190431 (+) | 318 | WP_003028473.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EL087_RS01005 (NCTC11169_00196) | comYD | 190391..190819 (+) | 429 | WP_037566697.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| EL087_RS01010 (NCTC11169_00197) | comGE/cglE | 190791..191084 (+) | 294 | WP_126406234.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| EL087_RS01015 (NCTC11169_00198) | comGF/cglF | 191068..191505 (+) | 438 | WP_049513212.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| EL087_RS01020 (NCTC11169_00199) | comGG | 191486..191812 (+) | 327 | WP_269470973.1 | competence type IV pilus minor pilin ComGG | - |
| EL087_RS01025 (NCTC11169_00200) | comYH | 191884..192837 (+) | 954 | WP_003039058.1 | class I SAM-dependent methyltransferase | Machinery gene |
| EL087_RS01030 (NCTC11169_00201) | - | 192884..194083 (+) | 1200 | WP_126406237.1 | acetate kinase | - |
| EL087_RS01035 (NCTC11169_00202) | glmS | 194470..196284 (+) | 1815 | WP_126406239.1 | glutamine--fructose-6-phosphate transaminase (isomerizing) | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36040.86 Da Isoelectric Point: 4.2666
>NTDB_id=1120236 EL087_RS01025 WP_003039058.1 191884..192837(+) (comYH) [Streptococcus milleri strain NCTC11169]
MNFEKIEQAYALLLENVQEIQNELLTSFYDALVEQNGSYLDGNIELDSVRQNNEKLKALKLNKEEWRRAYQFLLMKAAQT
EPLQANHQFTPDSIGFILTFLIDQLSKKEHIDILEIGSGMGNLVETILNNTQKNVDYLGLELDDLLIDISASIADVMDAK
VSFVQGDAVRPQVLKESDVIISDLPVGFYPDDSIAARYEVASTEEHTYAHHLLMEQSLKYLKPDGYAIFLAPNDLLSSSQ
SDLLKKWLQKHAQIVAMIALPEALFGNAAYAKTIFVLKKQEEQVVQPFVYALSDLQDQNDLLEFSEKFQNWSRESEI
MNFEKIEQAYALLLENVQEIQNELLTSFYDALVEQNGSYLDGNIELDSVRQNNEKLKALKLNKEEWRRAYQFLLMKAAQT
EPLQANHQFTPDSIGFILTFLIDQLSKKEHIDILEIGSGMGNLVETILNNTQKNVDYLGLELDDLLIDISASIADVMDAK
VSFVQGDAVRPQVLKESDVIISDLPVGFYPDDSIAARYEVASTEEHTYAHHLLMEQSLKYLKPDGYAIFLAPNDLLSSSQ
SDLLKKWLQKHAQIVAMIALPEALFGNAAYAKTIFVLKKQEEQVVQPFVYALSDLQDQNDLLEFSEKFQNWSRESEI
Nucleotide
Download Length: 954 bp
>NTDB_id=1120236 EL087_RS01025 WP_003039058.1 191884..192837(+) (comYH) [Streptococcus milleri strain NCTC11169]
ATGAATTTTGAAAAAATTGAACAGGCCTATGCGCTCTTGTTAGAAAATGTCCAAGAAATCCAAAATGAGCTTTTAACGAG
CTTTTATGATGCTTTGGTAGAGCAAAATGGCAGTTATCTGGACGGGAATATCGAACTAGATAGTGTTCGACAGAACAATG
AAAAACTGAAAGCGTTGAAATTAAACAAAGAAGAATGGCGTCGAGCCTACCAATTTTTGCTGATGAAAGCAGCTCAAACA
GAGCCTTTGCAAGCAAATCATCAATTCACTCCAGATTCTATTGGATTTATCTTAACTTTTCTCATTGATCAATTGAGTAA
AAAAGAACACATTGATATTTTAGAAATTGGGAGCGGTATGGGGAATTTAGTCGAGACAATTCTCAATAATACACAAAAAA
ACGTGGATTATCTAGGGCTAGAATTGGACGATCTGTTAATTGATATATCAGCCAGTATCGCAGATGTGATGGACGCAAAG
GTCAGTTTTGTACAAGGCGACGCAGTGCGTCCGCAAGTATTGAAAGAAAGCGATGTGATTATTAGCGATTTACCAGTTGG
CTTTTATCCTGATGATAGCATTGCGGCGCGCTATGAAGTGGCTAGTACAGAGGAGCATACTTATGCTCATCATCTGTTAA
TGGAGCAATCGCTCAAGTATCTCAAACCAGATGGCTATGCTATTTTCCTTGCCCCCAATGATTTATTGAGCAGCTCACAA
AGTGATTTATTGAAGAAATGGCTACAAAAGCATGCCCAGATAGTTGCGATGATTGCGTTGCCAGAAGCACTTTTTGGAAA
TGCAGCGTATGCTAAAACAATTTTTGTGCTGAAAAAGCAAGAAGAACAAGTTGTTCAGCCGTTTGTTTATGCTTTGTCCG
ATTTGCAAGATCAGAACGATTTATTGGAATTTAGCGAAAAGTTTCAAAATTGGAGCAGAGAAAGTGAAATTTAA
ATGAATTTTGAAAAAATTGAACAGGCCTATGCGCTCTTGTTAGAAAATGTCCAAGAAATCCAAAATGAGCTTTTAACGAG
CTTTTATGATGCTTTGGTAGAGCAAAATGGCAGTTATCTGGACGGGAATATCGAACTAGATAGTGTTCGACAGAACAATG
AAAAACTGAAAGCGTTGAAATTAAACAAAGAAGAATGGCGTCGAGCCTACCAATTTTTGCTGATGAAAGCAGCTCAAACA
GAGCCTTTGCAAGCAAATCATCAATTCACTCCAGATTCTATTGGATTTATCTTAACTTTTCTCATTGATCAATTGAGTAA
AAAAGAACACATTGATATTTTAGAAATTGGGAGCGGTATGGGGAATTTAGTCGAGACAATTCTCAATAATACACAAAAAA
ACGTGGATTATCTAGGGCTAGAATTGGACGATCTGTTAATTGATATATCAGCCAGTATCGCAGATGTGATGGACGCAAAG
GTCAGTTTTGTACAAGGCGACGCAGTGCGTCCGCAAGTATTGAAAGAAAGCGATGTGATTATTAGCGATTTACCAGTTGG
CTTTTATCCTGATGATAGCATTGCGGCGCGCTATGAAGTGGCTAGTACAGAGGAGCATACTTATGCTCATCATCTGTTAA
TGGAGCAATCGCTCAAGTATCTCAAACCAGATGGCTATGCTATTTTCCTTGCCCCCAATGATTTATTGAGCAGCTCACAA
AGTGATTTATTGAAGAAATGGCTACAAAAGCATGCCCAGATAGTTGCGATGATTGCGTTGCCAGAAGCACTTTTTGGAAA
TGCAGCGTATGCTAAAACAATTTTTGTGCTGAAAAAGCAAGAAGAACAAGTTGTTCAGCCGTTTGTTTATGCTTTGTCCG
ATTTGCAAGATCAGAACGATTTATTGGAATTTAGCGAAAAGTTTCAAAATTGGAGCAGAGAAAGTGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
61.27 |
99.369 |
0.609 |
| comYH | Streptococcus mutans UA159 |
60.952 |
99.369 |
0.606 |