Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EL100_RS01660 Genome accession   NZ_LR134285
Coordinates   324317..326302 (-) Length   661 a.a.
NCBI ID   WP_126403803.1    Uniprot ID   -
Organism   Streptococcus australis strain NCTC3168     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 319317..331302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL100_RS01640 (NCTC3168_00338) amiF 319815..320738 (-) 924 WP_048714745.1 ATP-binding cassette domain-containing protein Regulator
  EL100_RS01645 (NCTC3168_00339) amiE 320748..321815 (-) 1068 WP_126403805.1 ABC transporter ATP-binding protein Regulator
  EL100_RS01650 (NCTC3168_00340) amiD 321827..322753 (-) 927 WP_048692005.1 oligopeptide ABC transporter permease OppC Regulator
  EL100_RS01655 (NCTC3168_00341) amiC 322753..324252 (-) 1500 WP_126403804.1 ABC transporter permease Regulator
  EL100_RS01660 (NCTC3168_00342) amiA3 324317..326302 (-) 1986 WP_126403803.1 peptide ABC transporter substrate-binding protein Regulator
  EL100_RS01665 (NCTC3168_00343) amiA3 326483..328447 (-) 1965 WP_126403802.1 peptide ABC transporter substrate-binding protein Regulator
  EL100_RS01670 (NCTC3168_00344) pbp3 328622..329863 (+) 1242 WP_126403801.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  EL100_RS01675 (NCTC3168_00345) - 329929..330501 (-) 573 WP_126403800.1 hypothetical protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 72981.00 Da        Isoelectric Point: 5.0004

>NTDB_id=1120150 EL100_RS01660 WP_126403803.1 324317..326302(-) (amiA3) [Streptococcus australis strain NCTC3168]
MKKSKVFAFAGVTLLAATFLAACSGSKDSKSASKKDTTYGYVYTDDPTTLDYTVSSKASVHDITTNGVDGLLENDKYGNL
VPSIAEDWSVSKDGLTYTYKIRKGVKWYDADGEEHGEVTAHDFVTGLKHAADKKSESLPLVKDSIKGLKDYSEGKISDFS
EVGVKAVDDYTLEYTLNQPETFWNSKTTNGVLFPISTEFLKSKGDEFGQPGNVKSILFNGPFLLKSITSKSEITFEKNED
YWDKDNVHIDKIKFSYYDGSDQDSLARGFSDGSYTVARLFPASSNFASVEKKYKDNIYNTQPGAGVAVFGFNIDRQAYNH
TSKTSDDQKSSTKKAILNKNFRQAITFALNRENYSAQVNGKEYAKAAIRNMYTAPAFVQVNGKDFGDVVADKLQTYGDQW
SGVNLADGQNGLYSKEKAKAQFEKAKAELQKEGVQFPIHLDVPVAQNSTNFVSRMQSFKQSVEETLGTENVVVDLQMMDQ
DEVLNITLNVPSAAETDWDLQGLVGWNPDYDDPSTYLDTLQPSSPDQTKTYLGFAGGVDNASAKAVGLDEFAKLLDDAEK
ETQDVVTRYNKFAAAQAWLTDSALVIPTMTSSGAGTVVSKVVPFSGPSSQTGNKGSTYFKYVEVQDEPVTKKQYDQAREK
WLKEKADSNKKAQQELEKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=1120150 EL100_RS01660 WP_126403803.1 324317..326302(-) (amiA3) [Streptococcus australis strain NCTC3168]
ATGAAAAAAAGTAAAGTTTTTGCATTTGCCGGAGTAACATTACTCGCAGCAACTTTCCTTGCAGCATGTTCTGGCTCAAA
AGATAGCAAGTCTGCATCAAAAAAAGATACAACATATGGCTATGTTTATACAGATGATCCAACAACTTTGGATTACACTG
TATCTTCAAAAGCTTCCGTACACGATATTACAACAAACGGTGTAGATGGTTTGTTGGAAAACGACAAATACGGAAACCTT
GTACCATCTATTGCTGAAGATTGGTCTGTTTCAAAAGACGGTTTGACTTATACTTACAAAATCCGTAAGGGTGTTAAATG
GTATGATGCTGACGGCGAAGAGCATGGTGAAGTAACAGCACATGACTTTGTTACTGGATTGAAGCATGCGGCAGACAAGA
AATCAGAATCTCTTCCATTGGTGAAAGACTCAATCAAAGGATTGAAAGACTACTCAGAAGGAAAAATTTCAGACTTCTCT
GAGGTTGGGGTCAAAGCAGTAGATGATTATACGCTTGAATACACCTTGAATCAACCAGAAACTTTCTGGAATTCAAAAAC
AACTAATGGGGTTCTTTTCCCAATTAGTACAGAATTCTTGAAGAGCAAGGGTGATGAATTTGGTCAACCAGGTAATGTCA
AATCAATCTTGTTCAATGGTCCATTCCTTTTGAAATCAATCACTTCTAAATCAGAAATCACTTTTGAGAAGAACGAAGAT
TACTGGGATAAAGACAACGTTCATATCGACAAGATCAAATTCTCTTATTATGATGGATCAGATCAAGATTCATTGGCGCG
TGGCTTTAGTGATGGATCGTACACAGTTGCTCGTCTCTTCCCAGCAAGTTCAAACTTTGCGTCTGTTGAAAAGAAATACA
AAGACAATATCTACAACACACAACCTGGAGCTGGTGTAGCAGTCTTTGGTTTCAACATTGACCGTCAAGCATACAACCAT
ACTTCTAAGACGTCAGATGATCAGAAATCTTCTACTAAGAAAGCGATCTTAAACAAGAATTTCCGTCAAGCGATCACATT
TGCCTTGAACCGCGAAAATTATTCAGCGCAAGTCAATGGTAAAGAATACGCTAAGGCTGCTATTCGAAACATGTACACTG
CACCTGCCTTTGTTCAAGTAAACGGTAAAGACTTTGGGGATGTAGTAGCAGACAAGTTGCAAACATATGGAGATCAATGG
AGCGGTGTGAATCTTGCAGACGGTCAAAACGGCCTCTATAGCAAGGAAAAAGCAAAAGCTCAATTTGAAAAAGCAAAAGC
TGAACTCCAAAAAGAAGGTGTTCAATTCCCAATCCACTTGGATGTTCCAGTTGCACAAAACTCAACAAACTTTGTGTCAC
GGATGCAATCCTTCAAACAATCAGTTGAAGAAACACTTGGTACAGAAAACGTTGTTGTGGACCTTCAAATGATGGACCAA
GATGAAGTCTTGAACATTACATTGAACGTACCATCAGCTGCAGAAACTGACTGGGATCTTCAAGGGCTTGTAGGATGGAA
TCCAGACTACGATGATCCATCTACTTACCTTGACACCTTGCAACCATCTTCACCAGACCAAACTAAGACTTACCTTGGAT
TTGCTGGTGGTGTCGATAATGCTTCTGCTAAAGCAGTCGGTTTAGATGAATTTGCGAAATTGCTTGATGATGCAGAAAAA
GAAACGCAAGATGTAGTGACTCGTTACAACAAATTTGCAGCAGCTCAAGCTTGGTTAACAGATAGTGCATTAGTGATTCC
AACTATGACAAGTTCAGGTGCTGGAACAGTTGTTTCAAAAGTAGTTCCATTCTCTGGACCTTCATCACAAACAGGTAACA
AAGGATCAACTTATTTCAAATATGTTGAAGTTCAAGATGAACCTGTCACTAAAAAACAATATGATCAAGCACGTGAAAAA
TGGTTGAAAGAAAAAGCTGATTCAAATAAAAAAGCTCAGCAAGAACTAGAAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(80-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.276

100

0.595
  amiA3 Streptococcus thermophilus LMG 18311

58.824

100

0.59
  amiA Streptococcus salivarius strain HSISS4

58.308

100

0.584

Multiple sequence alignment