Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   EL100_RS01650 Genome accession   NZ_LR134285
Coordinates   321827..322753 (-) Length   308 a.a.
NCBI ID   WP_048692005.1    Uniprot ID   -
Organism   Streptococcus australis strain NCTC3168     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 316827..327753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL100_RS01640 (NCTC3168_00338) amiF 319815..320738 (-) 924 WP_048714745.1 ATP-binding cassette domain-containing protein Regulator
  EL100_RS01645 (NCTC3168_00339) amiE 320748..321815 (-) 1068 WP_126403805.1 ABC transporter ATP-binding protein Regulator
  EL100_RS01650 (NCTC3168_00340) amiD 321827..322753 (-) 927 WP_048692005.1 oligopeptide ABC transporter permease OppC Regulator
  EL100_RS01655 (NCTC3168_00341) amiC 322753..324252 (-) 1500 WP_126403804.1 ABC transporter permease Regulator
  EL100_RS01660 (NCTC3168_00342) amiA3 324317..326302 (-) 1986 WP_126403803.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34538.43 Da        Isoelectric Point: 9.7758

>NTDB_id=1120148 EL100_RS01650 WP_048692005.1 321827..322753(-) (amiD) [Streptococcus australis strain NCTC3168]
MSTIDKKKFQFVERDDFASETIDAPSYSYWKSVFRQFFKKKSTIFMLAVLVGILLMSFVYPMFSNFDYNDVSKVNDFTAR
LNPPSAKAFFGTDNNGKSLFDGVWFGARNSIIISFIATLINVVIGVVIGGIWGVSKSIDRFMMEVYNVISNVPFMLIVIV
LTYSIGAGFWNLILAMTVTGWIGIAYSIRVQIMRYRDLEYNLASRTLGTPTLKIVTKNILPQLVSVIVTTTTQLLPAFIS
TEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTVLVLVSLSFYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1120148 EL100_RS01650 WP_048692005.1 321827..322753(-) (amiD) [Streptococcus australis strain NCTC3168]
ATGTCTACAATTGATAAAAAGAAATTCCAATTTGTTGAACGTGACGACTTTGCCTCTGAAACAATTGATGCGCCGTCGTA
CTCCTACTGGAAGTCAGTATTTCGTCAATTTTTTAAAAAGAAATCAACTATTTTCATGTTAGCAGTTTTGGTTGGCATTC
TCTTGATGAGTTTTGTCTATCCAATGTTTTCAAACTTTGATTACAATGATGTAAGTAAAGTAAATGACTTCACTGCTCGT
TTGAATCCTCCAAGTGCCAAGGCCTTCTTCGGTACGGATAACAATGGTAAATCCTTGTTTGATGGAGTTTGGTTTGGTGC
CCGCAATTCGATTATCATCTCCTTTATTGCTACCTTGATCAATGTTGTGATTGGTGTTGTGATTGGTGGGATTTGGGGTG
TATCAAAATCAATCGACCGCTTCATGATGGAAGTTTACAACGTTATTTCAAACGTTCCATTCATGTTAATTGTTATTGTC
TTGACTTACTCAATCGGTGCTGGTTTCTGGAACTTGATTTTGGCGATGACGGTAACAGGATGGATTGGGATTGCTTATTC
TATCCGTGTTCAAATTATGCGTTACCGTGATTTAGAGTACAACTTGGCCAGCCGTACTTTGGGTACTCCAACTCTAAAAA
TCGTGACAAAAAATATCTTGCCACAGTTGGTATCTGTCATTGTGACGACAACTACACAGTTGTTGCCAGCCTTCATTTCA
ACTGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTGCCAATTACAGTTCCAAGTTTAGGTCGTCTGATTTCAGATTACTC
ACAAAACGTAACAACCAATGCGTATCTTTTCTGGATTCCATTGACAGTCTTAGTCTTGGTATCCTTGTCATTCTATATCG
TTGGACAAAACCTTGCAGATGCCAGCGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

77.597

100

0.776
  amiD Streptococcus thermophilus LMG 18311

76.623

100

0.766
  amiD Streptococcus thermophilus LMD-9

76.623

100

0.766

Multiple sequence alignment