Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EL100_RS01665 Genome accession   NZ_LR134285
Coordinates   326483..328447 (-) Length   654 a.a.
NCBI ID   WP_126403802.1    Uniprot ID   -
Organism   Streptococcus australis strain NCTC3168     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 321483..333447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL100_RS01650 (NCTC3168_00340) amiD 321827..322753 (-) 927 WP_048692005.1 oligopeptide ABC transporter permease OppC Regulator
  EL100_RS01655 (NCTC3168_00341) amiC 322753..324252 (-) 1500 WP_126403804.1 ABC transporter permease Regulator
  EL100_RS01660 (NCTC3168_00342) amiA3 324317..326302 (-) 1986 WP_126403803.1 peptide ABC transporter substrate-binding protein Regulator
  EL100_RS01665 (NCTC3168_00343) amiA3 326483..328447 (-) 1965 WP_126403802.1 peptide ABC transporter substrate-binding protein Regulator
  EL100_RS01670 (NCTC3168_00344) pbp3 328622..329863 (+) 1242 WP_126403801.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  EL100_RS01675 (NCTC3168_00345) - 329929..330501 (-) 573 WP_126403800.1 hypothetical protein -
  EL100_RS01680 (NCTC3168_00346) sufB 330522..331934 (-) 1413 WP_006594961.1 Fe-S cluster assembly protein SufB -
  EL100_RS01685 (NCTC3168_00347) sufU 332080..332514 (-) 435 WP_126403799.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72567.50 Da        Isoelectric Point: 4.8006

>NTDB_id=1120151 EL100_RS01665 WP_126403802.1 326483..328447(-) (amiA3) [Streptococcus australis strain NCTC3168]
MKVNKRFVLAGVSLASALLLTACGGGSSNQSTYSYIYSTDPNTLDYIASTRTTTSDITSNLVDGLLENDKYGNLIPSLAE
DWTVSEDGLVYTYKLRKDAKWYTSEGEEYGAVTAHDFVTGIKHAVESKSEGLFLIQNSIKGLDAYAKGETTDFKTVGVKA
LDDYTVQYTLERPESFWNSKTTSGVLFPVNAAFLESQGKDFGSLKPSSILYNGPYYLKNLTSKSQIELVKNKEYYDEKNV
HIDNVKLTYNDGSDPESVIKKFENGQYSFATVMPNSSTYKSVKKKFGDNIVYGVQYGTSYYLGFNIDRQKYNHTAKTTDA
QKSSTKQAILNKDFRQAVNFAFDREAYAAQTSGADAATKILRNTLVPPTFVQVNGEEFGKVVEKQLVTYGDEWKDVNLDD
AQTTLYNQEKAKAEFAKAKEQLQKEGVQFPIHLDYVVSQTDNSQVQQASSFKQSVEAVLGADNVVVDIQKLSDDDFNNIT
YFTDTAAEKDYDLAGGGWVPDYQDPSTYLESLSPVNGSVFYYLGVDAGSNSPAISAVDFGKYAELLKDANAEVSDQAVRY
EKYAAAQAWLTDSSLILPTVSNGGTPMLQRTVPYSRAASWVGTKGTGTNYKYLELSEEVIKTKDYDASKEKWLKEKAESN
KKAQEELKNHIESK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=1120151 EL100_RS01665 WP_126403802.1 326483..328447(-) (amiA3) [Streptococcus australis strain NCTC3168]
ATGAAAGTAAATAAACGGTTCGTACTGGCCGGTGTTTCTCTAGCCAGCGCTCTTCTATTGACAGCCTGCGGTGGTGGAAG
CAGCAATCAATCTACTTATTCTTATATTTATTCAACAGATCCAAATACATTGGACTACATTGCATCGACTCGTACAACGA
CGTCTGATATTACAAGTAACCTTGTTGATGGTTTGTTAGAAAATGATAAATATGGAAATTTAATCCCAAGTTTGGCAGAA
GACTGGACAGTTTCAGAAGATGGCTTGGTCTATACTTATAAACTTCGAAAAGATGCTAAATGGTACACCAGTGAAGGGGA
AGAGTATGGTGCTGTAACAGCTCACGATTTTGTGACAGGAATCAAACATGCTGTGGAATCAAAATCAGAAGGTCTCTTCT
TAATCCAAAACTCCATTAAAGGTTTGGATGCCTATGCCAAGGGTGAAACAACAGATTTCAAGACAGTTGGCGTGAAAGCC
CTAGATGATTACACCGTTCAATATACCTTGGAACGCCCAGAAAGCTTTTGGAATTCTAAGACGACATCAGGCGTCCTTTT
CCCAGTTAACGCAGCTTTCTTAGAATCTCAAGGAAAAGACTTTGGTTCTTTAAAACCAAGTAGTATTCTCTATAACGGTC
CCTATTATTTGAAGAATTTAACTTCAAAATCTCAAATTGAACTTGTAAAAAATAAAGAATACTATGATGAAAAGAATGTT
CATATTGATAATGTGAAGTTGACCTACAATGACGGATCAGATCCAGAATCGGTCATCAAGAAATTCGAAAATGGTCAATA
TTCATTTGCGACAGTAATGCCAAATAGCTCTACTTATAAGAGTGTGAAAAAGAAATTTGGTGATAATATTGTTTATGGTG
TTCAATATGGTACATCTTACTACCTAGGCTTCAATATTGATCGTCAGAAGTATAACCATACAGCCAAAACGACAGATGCT
CAAAAATCGTCTACAAAACAAGCGATTTTAAACAAGGATTTCCGTCAAGCCGTCAACTTTGCCTTTGACCGTGAAGCCTA
TGCAGCTCAAACATCTGGTGCAGATGCAGCGACCAAGATTCTTCGGAATACCTTGGTTCCACCGACTTTTGTTCAAGTAA
ATGGCGAAGAGTTCGGTAAGGTTGTCGAGAAACAATTGGTGACCTATGGGGATGAGTGGAAAGATGTAAATCTAGATGAT
GCCCAAACCACGCTCTACAATCAAGAAAAAGCCAAGGCTGAATTTGCAAAAGCTAAAGAACAACTGCAAAAAGAAGGGGT
ACAATTCCCAATTCATCTGGATTACGTTGTCAGTCAGACAGATAACAGCCAGGTGCAACAAGCTAGCTCCTTCAAACAAT
CCGTAGAAGCTGTTCTTGGTGCAGACAATGTTGTCGTAGATATTCAGAAATTATCTGATGATGACTTTAACAACATTACC
TATTTCACAGATACTGCTGCTGAGAAAGATTATGATCTTGCAGGCGGAGGATGGGTGCCAGACTACCAAGATCCATCTAC
TTATTTGGAGAGTTTAAGTCCTGTTAACGGTTCTGTTTTCTACTATCTAGGTGTGGATGCAGGTTCGAACAGCCCTGCTA
TTTCAGCAGTTGACTTTGGTAAGTATGCAGAGCTCTTAAAAGATGCCAATGCAGAAGTGAGTGATCAAGCTGTACGCTAT
GAGAAATACGCAGCCGCTCAAGCATGGCTAACCGATAGTTCTTTGATCTTGCCAACTGTTTCAAATGGTGGAACGCCAAT
GTTGCAACGGACTGTTCCGTATAGTCGTGCAGCTTCATGGGTTGGAACAAAAGGTACAGGAACCAACTATAAATATCTTG
AACTTTCAGAAGAAGTCATCAAGACAAAGGATTACGATGCAAGTAAAGAAAAATGGTTGAAAGAAAAGGCTGAATCCAAT
AAAAAAGCCCAAGAAGAATTAAAGAACCACATCGAATCTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.939

100

0.544
  amiA3 Streptococcus thermophilus LMG 18311

53.485

100

0.54
  amiA Streptococcus salivarius strain HSISS4

53.111

100

0.535

Multiple sequence alignment