Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LOA_RS05160 Genome accession   NZ_CP004006
Coordinates   1052116..1053174 (+) Length   352 a.a.
NCBI ID   WP_025385432.1    Uniprot ID   -
Organism   Legionella oakridgensis ATCC 33761 = DSM 21215     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1047116..1058174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOA_RS05150 (Loa_01150) - 1048202..1050567 (-) 2366 Protein_1059 penicillin-binding protein 1A -
  LOA_RS05155 (Loa_01151) - 1050870..1051811 (-) 942 WP_025385431.1 hypothetical protein -
  LOA_RS05160 (Loa_01152) pilM 1052116..1053174 (+) 1059 WP_025385432.1 type IV pilus assembly protein PilM Machinery gene
  LOA_RS05165 (Loa_01153) - 1053412..1053879 (+) 468 WP_238551333.1 PilN domain-containing protein -
  LOA_RS05170 (Loa_01154) pilO 1053872..1054471 (+) 600 WP_025385433.1 type 4a pilus biogenesis protein PilO Machinery gene
  LOA_RS05175 (Loa_01155) - 1054519..1055076 (+) 558 WP_025385434.1 pilus assembly protein PilP -
  LOA_RS05180 (Loa_01156) pilQ 1055359..1057551 (+) 2193 WP_025385435.1 type IV pilus secretin PilQ Machinery gene

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38785.88 Da        Isoelectric Point: 5.1645

>NTDB_id=111997 LOA_RS05160 WP_025385432.1 1052116..1053174(+) (pilM) [Legionella oakridgensis ATCC 33761 = DSM 21215]
MLKWFKSRPRKMLGVDISATSVKILEISISGERHCVEGYGRAVLPETAMEGNIIKDVDAVADCIRKILSSEHLTCKQAAL
AVPDSATISKIIQINDGLKDEEMEEIVVMEADKLIPYPIDEINLDFNVLGSSSKNTAMLDVLLVASRAENVSNRVEAITR
AGLEAKVVDVESYAVERAAQLLMSDLPAEGVNKIIAIIDIGAVYTHFFALHGLKIIFTREEEFGGRQLLESIMQRYGMKA
EEAAVALQQGTLPEDYEKDVLQPFRELVLLRVKRGLQFFFSASDHTYVDHILLAGGVAKQLNIAQLLQEHINIPASVANP
LKHMDFANGVSRERVMSDSSRLLVACGLALRA

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=111997 LOA_RS05160 WP_025385432.1 1052116..1053174(+) (pilM) [Legionella oakridgensis ATCC 33761 = DSM 21215]
GTGCTTAAATGGTTTAAATCCAGGCCGCGTAAGATGCTTGGCGTAGACATTAGCGCAACTTCTGTAAAAATTCTCGAAAT
TTCTATCTCTGGCGAGCGACATTGCGTTGAAGGGTATGGTCGGGCCGTGTTGCCGGAAACTGCAATGGAAGGCAATATAA
TTAAAGATGTTGATGCGGTGGCTGACTGCATTAGGAAAATATTGTCCAGCGAACACTTAACTTGTAAACAAGCCGCACTT
GCTGTTCCAGATTCGGCGACTATTAGCAAAATCATTCAAATAAACGATGGTTTGAAAGATGAGGAAATGGAAGAAATTGT
AGTCATGGAAGCAGACAAGCTGATTCCCTATCCAATTGACGAAATCAATCTTGACTTTAATGTTTTAGGGTCTTCTAGTA
AAAATACAGCTATGTTGGATGTCCTTCTTGTAGCATCCAGGGCGGAAAATGTAAGTAATCGTGTAGAAGCAATCACTCGA
GCAGGGCTTGAAGCCAAAGTGGTGGATGTAGAATCCTATGCTGTTGAGCGCGCTGCCCAGCTGCTCATGTCAGATTTGCC
GGCAGAAGGCGTAAACAAAATCATTGCGATCATTGATATTGGGGCTGTATATACTCATTTTTTTGCCTTGCATGGATTAA
AAATTATCTTTACCCGTGAAGAAGAGTTTGGTGGTCGGCAGTTACTAGAATCCATCATGCAACGCTATGGGATGAAAGCG
GAAGAGGCAGCGGTTGCTCTGCAGCAAGGAACATTGCCAGAAGATTATGAAAAGGATGTTTTACAGCCATTTAGGGAGCT
CGTTCTACTACGAGTAAAGCGCGGATTACAATTCTTTTTTTCTGCCAGCGACCATACTTATGTGGATCATATTTTACTGG
CTGGTGGAGTGGCAAAACAATTAAATATTGCGCAATTATTACAGGAGCATATCAATATTCCAGCGAGTGTTGCCAACCCA
TTAAAACACATGGATTTTGCTAACGGAGTGAGTCGGGAGCGGGTGATGTCAGATTCTTCAAGATTATTGGTCGCTTGTGG
GTTGGCATTACGAGCCTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Legionella pneumophila strain ERS1305867

61.254

99.716

0.611
  comM Acinetobacter nosocomialis M2

42.898

100

0.429
  pilM Acinetobacter baumannii D1279779

42.614

100

0.426
  comM Acinetobacter baylyi ADP1

42.493

100

0.426

Multiple sequence alignment