Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   EL076_RS07080 Genome accession   NZ_LR134275
Coordinates   1420378..1422348 (-) Length   656 a.a.
NCBI ID   WP_003093456.1    Uniprot ID   -
Organism   Streptococcus vestibularis strain NCTC12167     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1415378..1427348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL076_RS07060 (NCTC12167_01391) amiF 1415881..1416810 (-) 930 WP_126429853.1 ATP-binding cassette domain-containing protein Regulator
  EL076_RS07065 (NCTC12167_01392) amiE 1416803..1417888 (-) 1086 WP_003093342.1 ABC transporter ATP-binding protein Regulator
  EL076_RS07070 (NCTC12167_01393) amiD 1417898..1418824 (-) 927 WP_003094850.1 oligopeptide ABC transporter permease OppC Regulator
  EL076_RS07075 (NCTC12167_01394) amiC 1418824..1420317 (-) 1494 WP_126429855.1 ABC transporter permease Regulator
  EL076_RS07080 (NCTC12167_01395) amiA 1420378..1422348 (-) 1971 WP_003093456.1 peptide ABC transporter substrate-binding protein Regulator
  EL076_RS07085 (NCTC12167_01396) pta 1422576..1423559 (-) 984 WP_003094325.1 phosphate acetyltransferase -
  EL076_RS07090 (NCTC12167_01397) - 1423573..1424469 (-) 897 WP_003094194.1 RluA family pseudouridine synthase -
  EL076_RS07095 (NCTC12167_01398) - 1424466..1425302 (-) 837 WP_003094740.1 NAD kinase -
  EL076_RS07100 (NCTC12167_01399) - 1425277..1425948 (-) 672 WP_003094485.1 GTP pyrophosphokinase family protein -
  EL076_RS07105 (NCTC12167_01400) - 1426044..1426619 (+) 576 WP_003094309.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72023.85 Da        Isoelectric Point: 4.9628

>NTDB_id=1119901 EL076_RS07080 WP_003093456.1 1420378..1422348(-) (amiA) [Streptococcus vestibularis strain NCTC12167]
MKKSKWLALVGVALLSVGALAACSSKSNTSGTTYGYIYSSDPETLDYITSNTGPTTTAVTNAVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADAKAGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDYTLQYTLKKPEPYWNSKTTYSLLFPVNGDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKK
NVHFDAIKLTYDDGSDQEAQERGFTDGAYNIARVFPTSSNYASVEKKYKDNIYYTAAGASTSAIGVNIDRQSYKYTAKKT
DAEKSSTKKALLNKDFRQSINFAIDRTVYQSQVNGKDGSAKAIRNLFVPSDFVSAGNKTFGDLVTEKMSSYGDEWSGVNF
ADSQDGLYNAEKAKTEFAKAKDALQADGVQFPIHLDLPVDQSSKLNVTQAQSLKQTIEKSLGNDNVVIDINQLSSDDMQN
ATLNAANAAAEDWDISNGVIWSPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLDSAASETSDLN
VRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLAPFTGASMQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1119901 EL076_RS07080 WP_003093456.1 1420378..1422348(-) (amiA) [Streptococcus vestibularis strain NCTC12167]
ATGAAAAAAAGCAAATGGTTGGCTCTCGTGGGGGTAGCACTTCTAAGTGTTGGTGCGTTAGCGGCTTGTTCATCTAAATC
AAACACTAGCGGAACTACTTATGGTTATATTTACAGTTCGGATCCAGAAACCTTGGATTATATTACATCAAATACTGGAC
CTACGACAACTGCTGTAACTAACGCTGTAGATGGTCTTATGGAAGCTGATAAATATGGGAACCTTGTTCCTTCAGTAGCT
GAAGACTGGTCTGTCTCTCAAGATGGTCTTACCTATACCTATAAGATCCGTAAGGGTGTTAAATGGTATACTTCAGATGG
TGAAGAGTATGCTGATGTGACTGCCAAGGACTTTGTAACTGGTCTTAAGCATGCTGCAGATGCCAAAGCTGGGGCTCTCT
ATTTGGTACAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTGCCAATAAAGATTTCTCTAATGTGGGTGTCAAG
GCAATTGATGACTATACTTTGCAGTACACGCTTAAGAAACCAGAACCATACTGGAACTCTAAGACAACCTATAGTTTGCT
TTTCCCAGTAAATGGAGACTTCCTCAAGAATAAAGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTTTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGACTAAGAATGAAAATTATTGGGACAAGAAA
AATGTTCACTTTGATGCTATCAAATTGACGTATGATGATGGTTCGGATCAAGAGGCTCAAGAACGTGGTTTCACTGATGG
TGCTTATAATATTGCTCGTGTCTTCCCAACGAGTTCAAACTATGCTTCTGTAGAGAAGAAATATAAAGACAATATTTATT
ACACAGCAGCAGGTGCGTCTACATCAGCTATTGGTGTTAATATTGACCGTCAAAGTTACAAATACACTGCTAAAAAGACT
GACGCTGAAAAGTCTTCAACGAAAAAAGCTCTTTTGAATAAAGACTTCCGTCAATCAATTAACTTTGCTATTGACCGTAC
GGTATATCAATCACAAGTCAATGGTAAGGATGGATCAGCTAAAGCTATTCGAAATCTCTTTGTTCCTTCTGACTTCGTTA
GTGCAGGTAATAAGACCTTCGGAGATCTTGTTACAGAGAAAATGTCTTCATATGGGGATGAATGGTCAGGCGTGAATTTT
GCTGATAGTCAAGATGGCCTCTACAATGCAGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCCAAGCAGA
TGGTGTTCAATTTCCAATTCATTTGGACCTTCCAGTTGACCAAAGCTCTAAACTTAATGTTACCCAAGCCCAATCTTTGA
AACAAACCATTGAAAAATCATTGGGAAATGACAATGTGGTGATCGATATTAACCAATTGTCATCTGATGATATGCAAAAT
GCAACACTTAATGCAGCCAACGCAGCAGCAGAAGATTGGGATATTTCAAATGGTGTTATTTGGAGTCCAGACTATCAAGA
CCCATCAACTTATCTTGATATCTTCAAAACAACATCAAGTGAAAACACTAAGACTTTCATGGGTTATGATGATCCAAATA
ATGCGGCAGCAGCCCAAGTAGGACTCAAAGACTATGATGCCTTGCTTGATTCTGCAGCTTCAGAAACAAGTGACCTCAAT
GTTCGTTACGACCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGCTCGCTTGTGATTCCATTGACTGTTGGTAATGG
TGCTGCACCAGTTATCTCACGCTTGGCACCGTTTACCGGTGCTAGCATGCAGGTGGGAGATAAAAACTCATCAGACTACT
TCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

93.598

100

0.936
  amiA3 Streptococcus thermophilus LMG 18311

91.172

100

0.913
  amiA3 Streptococcus thermophilus LMD-9

91.02

100

0.912

Multiple sequence alignment