Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   EL076_RS07075 Genome accession   NZ_LR134275
Coordinates   1418824..1420317 (-) Length   497 a.a.
NCBI ID   WP_126429855.1    Uniprot ID   -
Organism   Streptococcus vestibularis strain NCTC12167     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1413824..1425317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL076_RS07045 (NCTC12167_01388) - 1413953..1414330 (+) 378 WP_003094041.1 GntR family transcriptional regulator -
  EL076_RS07050 (NCTC12167_01389) - 1414335..1415033 (+) 699 WP_003094313.1 ABC transporter ATP-binding protein -
  EL076_RS07055 (NCTC12167_01390) - 1415045..1415830 (+) 786 WP_126429851.1 ABC transporter permease -
  EL076_RS07060 (NCTC12167_01391) amiF 1415881..1416810 (-) 930 WP_126429853.1 ATP-binding cassette domain-containing protein Regulator
  EL076_RS07065 (NCTC12167_01392) amiE 1416803..1417888 (-) 1086 WP_003093342.1 ABC transporter ATP-binding protein Regulator
  EL076_RS07070 (NCTC12167_01393) amiD 1417898..1418824 (-) 927 WP_003094850.1 oligopeptide ABC transporter permease OppC Regulator
  EL076_RS07075 (NCTC12167_01394) amiC 1418824..1420317 (-) 1494 WP_126429855.1 ABC transporter permease Regulator
  EL076_RS07080 (NCTC12167_01395) amiA 1420378..1422348 (-) 1971 WP_003093456.1 peptide ABC transporter substrate-binding protein Regulator
  EL076_RS07085 (NCTC12167_01396) pta 1422576..1423559 (-) 984 WP_003094325.1 phosphate acetyltransferase -
  EL076_RS07090 (NCTC12167_01397) - 1423573..1424469 (-) 897 WP_003094194.1 RluA family pseudouridine synthase -
  EL076_RS07095 (NCTC12167_01398) - 1424466..1425302 (-) 837 WP_003094740.1 NAD kinase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55879.56 Da        Isoelectric Point: 9.9363

>NTDB_id=1119900 EL076_RS07075 WP_126429855.1 1418824..1420317(-) (amiC) [Streptococcus vestibularis strain NCTC12167]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIFERMGYIDYYDTKELQEKAS
SLDKSVTTKPTKANKAIYQKYVDSLGHGWSLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNRHIFKNSMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTMIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1119900 EL076_RS07075 WP_126429855.1 1418824..1420317(-) (amiC) [Streptococcus vestibularis strain NCTC12167]
ATGAAAAAATACATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTTTGATTTTCAGACAGGACCCAAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTTTGAACGTATGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGAGTTTGCATCAGTTTAAGCAAAGTAAGCAGTTCTATGCGACACGTGATGTACCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACGAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACTCAAGGCCAAGGGCAAACACAAAGCTCTGAGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCTAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGTGATGATCCGTACAC
ATCTACTAAGAGTCGCTATCAATACCCATCAATGGTGACAAGCTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCCTTAGCGATTCCATTGGGATCTTACATGGCACGCTTTAAAAATACACTCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCTATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAACAGGCACATTTTCAAGAATTCTATGGTTTCCTTGGTTTCAGGAATTCCAGCATCTATTGTTGG
GGTTATTACAGGGGCTACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTTGTTGGTCTGGTATTTATTTTCACAGCCCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATGATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

97.988

100

0.98
  amiC Streptococcus thermophilus LMG 18311

96.579

100

0.966
  amiC Streptococcus thermophilus LMD-9

96.177

100

0.962

Multiple sequence alignment