Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   EL076_RS07060 Genome accession   NZ_LR134275
Coordinates   1415881..1416810 (-) Length   309 a.a.
NCBI ID   WP_126429853.1    Uniprot ID   -
Organism   Streptococcus vestibularis strain NCTC12167     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1410881..1421810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL076_RS07035 (NCTC12167_01386) - 1412166..1412984 (-) 819 WP_003094472.1 Cof-type HAD-IIB family hydrolase -
  EL076_RS07040 (NCTC12167_01387) - 1412977..1413771 (-) 795 WP_126429849.1 HAD-IIB family hydrolase -
  EL076_RS07045 (NCTC12167_01388) - 1413953..1414330 (+) 378 WP_003094041.1 GntR family transcriptional regulator -
  EL076_RS07050 (NCTC12167_01389) - 1414335..1415033 (+) 699 WP_003094313.1 ABC transporter ATP-binding protein -
  EL076_RS07055 (NCTC12167_01390) - 1415045..1415830 (+) 786 WP_126429851.1 ABC transporter permease -
  EL076_RS07060 (NCTC12167_01391) amiF 1415881..1416810 (-) 930 WP_126429853.1 ATP-binding cassette domain-containing protein Regulator
  EL076_RS07065 (NCTC12167_01392) amiE 1416803..1417888 (-) 1086 WP_003093342.1 ABC transporter ATP-binding protein Regulator
  EL076_RS07070 (NCTC12167_01393) amiD 1417898..1418824 (-) 927 WP_003094850.1 oligopeptide ABC transporter permease OppC Regulator
  EL076_RS07075 (NCTC12167_01394) amiC 1418824..1420317 (-) 1494 WP_126429855.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35152.24 Da        Isoelectric Point: 6.8974

>NTDB_id=1119897 EL076_RS07060 WP_126429853.1 1415881..1416810(-) (amiF) [Streptococcus vestibularis strain NCTC12167]
MSEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINRHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKKEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=1119897 EL076_RS07060 WP_126429853.1 1415881..1416810(-) (amiF) [Streptococcus vestibularis strain NCTC12167]
ATGTCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAGGGAAGCAAGAAATTCGTTGCGGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACTACTATCGGACGTG
CCATTATTGGTCTGAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATAGACACTTATCGCACTCT
GAGAAAAACGACCTTATTCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTTGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCTAAAATCAAGGAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAACACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGT
ATTGCGCGTTCCTTGGTCATGCAACCTGACTTGGTCATCGCTGACGAACCAATCTCAGCCCTTGACGTGTCAGTCCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTATAAC
AATCCTATTCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGTCCAGGTCACTTCGTTT
GGGGTAACAAGAAAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

98.706

100

0.987
  amiF Streptococcus thermophilus LMG 18311

97.735

100

0.977
  amiF Streptococcus thermophilus LMD-9

97.411

100

0.974

Multiple sequence alignment