Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   EL077_RS09805 Genome accession   NZ_LR134273
Coordinates   2079584..2080807 (+) Length   407 a.a.
NCBI ID   WP_126437175.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain NCTC12091     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2074584..2085807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL077_RS09780 (NCTC12091_01981) - 2075218..2077803 (+) 2586 WP_111692893.1 YfhO family protein -
  EL077_RS09800 (NCTC12091_01985) rlmH 2078895..2079374 (-) 480 WP_012678751.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  EL077_RS09805 (NCTC12091_01986) htrA 2079584..2080807 (+) 1224 WP_126437175.1 S1C family serine protease Regulator
  EL077_RS09810 (NCTC12091_01987) spo0J 2080932..2081705 (+) 774 WP_126437177.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 407 a.a.        Molecular weight: 42451.04 Da        Isoelectric Point: 5.4809

>NTDB_id=1119786 EL077_RS09805 WP_126437175.1 2079584..2080807(+) (htrA) [Streptococcus equi subsp. equi strain NCTC12091]
MLKSKNILKPLWVLAIGFLGGLLAALVVNGFSQNSLTSSDAKGATTTSNVSFNNTTDTTKAVKVVQDAVVSVINYQKAAS
PAISNPYINLFGEENDTSAVQKEDELSIHSEGSGVVYKKEGNTAYLVTNNHVIEGAQRIEILTADGSKIVGELVGADTYS
DLAVVKIAADKIKTIAKFADSTKINVGEVAIAIGSPLGTKYANSVTEGIVSSLSRTVTSRNEAGETISTNAIQTDAAINP
GNSGGPLINIEGQVIGINSSKISSTPTGSGGAIEGIGFAIPSSDVVTIINQLESNGAVIRPALGITMVNLSNLSTSALIQ
LNIPTSVTSGVVVASTQNSMPALGKLEQYDVITEVDGKEVSSISDLQSVLYSHEINDTIKVTFYRGTAKKKVDIKLTKTT
KDLTKKQ

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1119786 EL077_RS09805 WP_126437175.1 2079584..2080807(+) (htrA) [Streptococcus equi subsp. equi strain NCTC12091]
GTGTTAAAATCAAAAAATATATTGAAGCCCTTATGGGTTTTAGCCATTGGATTTTTAGGGGGCTTATTAGCTGCCTTAGT
TGTTAACGGATTTAGTCAGAATTCTCTAACGTCTTCAGATGCAAAGGGAGCAACGACAACAAGCAACGTCAGCTTTAACA
ATACAACTGATACAACAAAAGCTGTTAAGGTGGTTCAAGATGCTGTAGTGTCTGTTATTAACTATCAAAAGGCTGCTTCG
CCTGCTATTTCAAATCCTTACATCAATCTTTTTGGAGAAGAAAATGACACCTCAGCGGTACAAAAAGAGGACGAGCTAAG
CATACACAGTGAAGGCTCCGGTGTTGTTTACAAAAAAGAAGGAAATACCGCTTATCTTGTAACCAACAATCATGTTATTG
AGGGAGCTCAACGAATTGAAATTTTAACAGCAGATGGCTCTAAGATCGTTGGAGAACTAGTTGGTGCAGACACTTATTCT
GACCTAGCTGTTGTCAAAATTGCTGCTGATAAAATCAAAACAATAGCCAAATTTGCAGATTCAACCAAAATTAATGTTGG
AGAGGTAGCCATTGCAATTGGTAGTCCTCTTGGAACAAAATATGCCAACTCAGTGACAGAAGGGATTGTTTCGAGTCTAA
GCCGTACAGTCACTTCAAGAAATGAGGCAGGTGAGACTATCTCAACAAATGCTATCCAAACTGATGCTGCTATCAATCCA
GGTAATTCAGGTGGACCACTCATCAATATTGAAGGTCAGGTCATTGGTATCAACTCAAGTAAAATATCCTCAACACCTAC
TGGCAGCGGCGGAGCCATTGAAGGGATTGGCTTTGCTATTCCATCAAGCGATGTTGTCACCATTATTAACCAACTAGAAT
CTAACGGAGCTGTTATCAGACCAGCCTTAGGCATTACTATGGTAAATCTAAGCAATCTATCAACCAGTGCATTGATTCAA
TTGAACATTCCAACAAGCGTTACCAGTGGTGTTGTCGTAGCTTCTACTCAAAATAGCATGCCAGCTCTTGGCAAATTGGA
GCAGTATGATGTCATTACTGAGGTTGACGGTAAAGAGGTTAGCTCAATCAGTGACCTACAAAGTGTCCTATACAGTCATG
AGATTAACGACACGATTAAGGTAACCTTCTACAGAGGAACTGCTAAGAAAAAAGTTGACATCAAATTAACAAAAACAACT
AAGGATCTAACTAAAAAGCAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.275

100

0.614

  htrA Streptococcus gordonii str. Challis substr. CH1

57.855

98.526

0.57

  htrA Streptococcus mitis NCTC 12261

55.164

97.543

0.538

  htrA Streptococcus pneumoniae Rx1

54.135

98.034

0.531

  htrA Streptococcus pneumoniae D39

54.135

98.034

0.531

  htrA Streptococcus pneumoniae R6

54.135

98.034

0.531

  htrA Streptococcus pneumoniae TIGR4

54.135

98.034

0.531


Multiple sequence alignment