Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | EL099_RS05745 | Genome accession | NZ_LR134271 |
| Coordinates | 1123588..1124007 (+) | Length | 139 a.a. |
| NCBI ID | WP_000934796.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain NCTC7988 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1109609..1158849 | 1123588..1124007 | within | 0 |
Gene organization within MGE regions
Location: 1109609..1158849
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL099_RS05625 (NCTC7988_01062) | - | 1109609..1110538 (-) | 930 | WP_000757587.1 | glycerophosphodiester phosphodiesterase | - |
| EL099_RS05630 (NCTC7988_01063) | - | 1110777..1111031 (+) | 255 | WP_001049150.1 | YlbG family protein | - |
| EL099_RS05635 (NCTC7988_01064) | - | 1111034..1111423 (-) | 390 | WP_000814565.1 | DUF7147 family protein | - |
| EL099_RS05640 (NCTC7988_01065) | rsmD | 1111493..1112035 (+) | 543 | WP_001263794.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| EL099_RS05645 (NCTC7988_01066) | coaD | 1112037..1112519 (+) | 483 | WP_000401377.1 | pantetheine-phosphate adenylyltransferase | - |
| EL099_RS05650 (NCTC7988_01067) | - | 1112581..1113720 (-) | 1140 | WP_000843605.1 | nucleotidyltransferase | - |
| EL099_RS05655 (NCTC7988_01068) | - | 1113847..1114404 (+) | 558 | WP_000872155.1 | YceD family protein | - |
| EL099_RS05665 (NCTC7988_01069) | rpmF | 1114484..1114657 (+) | 174 | WP_000290472.1 | 50S ribosomal protein L32 | - |
| EL099_RS05670 (NCTC7988_01070) | - | 1114774..1116159 (-) | 1386 | WP_000861307.1 | recombinase family protein | - |
| EL099_RS05675 (NCTC7988_01071) | - | 1116367..1117047 (-) | 681 | WP_069993724.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| EL099_RS05680 (NCTC7988_01072) | - | 1117079..1117804 (-) | 726 | WP_126525391.1 | PH domain-containing protein | - |
| EL099_RS05685 (NCTC7988_01073) | - | 1117822..1118523 (-) | 702 | WP_076692361.1 | XRE family transcriptional regulator | - |
| EL099_RS05690 (NCTC7988_01074) | - | 1118719..1118934 (+) | 216 | WP_000957143.1 | hypothetical protein | - |
| EL099_RS14825 (NCTC7988_01075) | - | 1118950..1119117 (+) | 168 | WP_015977683.1 | hypothetical protein | - |
| EL099_RS05695 (NCTC7988_01076) | - | 1119168..1119650 (-) | 483 | WP_015977661.1 | hypothetical protein | - |
| EL099_RS05700 (NCTC7988_01077) | - | 1120096..1120281 (+) | 186 | WP_126525393.1 | helix-turn-helix domain-containing protein | - |
| EL099_RS05705 (NCTC7988_01078) | - | 1120283..1121074 (+) | 792 | WP_001148575.1 | phage antirepressor | - |
| EL099_RS05710 (NCTC7988_01079) | tscA | 1121075..1121299 (+) | 225 | WP_000187184.1 | type II toxin-antitoxin system antitoxin TscA | - |
| EL099_RS05715 (NCTC7988_01081) | - | 1121490..1121720 (-) | 231 | WP_000395455.1 | hypothetical protein | - |
| EL099_RS14830 (NCTC7988_01082) | - | 1121780..1121917 (+) | 138 | WP_001568566.1 | hypothetical protein | - |
| EL099_RS05720 (NCTC7988_01083) | - | 1121901..1122068 (+) | 168 | WP_045178556.1 | DUF1270 domain-containing protein | - |
| EL099_RS05725 (NCTC7988_01084) | - | 1122069..1122389 (+) | 321 | WP_000219664.1 | hypothetical protein | - |
| EL099_RS05730 (NCTC7988_01085) | - | 1122481..1122741 (+) | 261 | WP_000291090.1 | DUF1108 family protein | - |
| EL099_RS05735 (NCTC7988_01086) | - | 1122751..1122972 (+) | 222 | WP_000815401.1 | DUF2483 family protein | - |
| EL099_RS05740 (NCTC7988_01087) | - | 1122965..1123588 (+) | 624 | WP_000139727.1 | DUF1071 domain-containing protein | - |
| EL099_RS05745 (NCTC7988_01088) | ssbA | 1123588..1124007 (+) | 420 | WP_000934796.1 | single-stranded DNA-binding protein | Machinery gene |
| EL099_RS05750 (NCTC7988_01089) | - | 1124021..1124695 (+) | 675 | WP_126525394.1 | putative HNHc nuclease | - |
| EL099_RS05755 (NCTC7988_01090) | - | 1124688..1125452 (+) | 765 | WP_058332265.1 | DnaD domain protein | - |
| EL099_RS05760 (NCTC7988_01091) | - | 1125452..1125808 (+) | 357 | WP_001132243.1 | hypothetical protein | - |
| EL099_RS05765 (NCTC7988_01092) | - | 1125805..1127046 (+) | 1242 | WP_126525396.1 | DnaB helicase C-terminal domain-containing protein | - |
| EL099_RS05770 (NCTC7988_01093) | - | 1127043..1127258 (+) | 216 | WP_061731561.1 | hypothetical protein | - |
| EL099_RS05775 (NCTC7988_01094) | - | 1127262..1127483 (+) | 222 | WP_001123690.1 | DUF3269 family protein | - |
| EL099_RS05780 (NCTC7988_01095) | - | 1127494..1127898 (+) | 405 | WP_015977666.1 | DUF1064 domain-containing protein | - |
| EL099_RS05785 (NCTC7988_01096) | - | 1127903..1128088 (+) | 186 | WP_001187244.1 | DUF3113 family protein | - |
| EL099_RS05790 (NCTC7988_01097) | - | 1128089..1128394 (+) | 306 | WP_001074144.1 | hypothetical protein | - |
| EL099_RS05795 (NCTC7988_01098) | - | 1128522..1128881 (+) | 360 | WP_061735298.1 | SA1788 family PVL leukocidin-associated protein | - |
| EL099_RS05800 (NCTC7988_01099) | - | 1128882..1129130 (+) | 249 | WP_126525398.1 | phi PVL orf 51-like protein | - |
| EL099_RS05805 (NCTC7988_01100) | - | 1129144..1129554 (+) | 411 | WP_000695750.1 | hypothetical protein | - |
| EL099_RS05810 (NCTC7988_01101) | - | 1129554..1129829 (+) | 276 | WP_000399884.1 | hypothetical protein | - |
| EL099_RS05815 (NCTC7988_01102) | - | 1129822..1130070 (+) | 249 | WP_001065080.1 | DUF1024 family protein | - |
| EL099_RS05820 (NCTC7988_01103) | - | 1130063..1130575 (+) | 513 | WP_126525400.1 | dUTP diphosphatase | - |
| EL099_RS05825 (NCTC7988_01104) | - | 1130642..1130929 (+) | 288 | WP_126525402.1 | DUF1381 domain-containing protein | - |
| EL099_RS05830 (NCTC7988_01105) | - | 1130922..1131158 (+) | 237 | WP_000608278.1 | DUF7366 family protein | - |
| EL099_RS05835 (NCTC7988_01106) | rinB | 1131151..1131324 (+) | 174 | WP_126525404.1 | transcriptional activator RinB | - |
| EL099_RS05840 (NCTC7988_01107) | - | 1131325..1131690 (+) | 366 | WP_126509065.1 | hypothetical protein | - |
| EL099_RS05845 (NCTC7988_01108) | - | 1131691..1131837 (+) | 147 | WP_031765539.1 | hypothetical protein | - |
| EL099_RS05850 (NCTC7988_01109) | - | 1131861..1132283 (+) | 423 | WP_126509064.1 | DUF1492 domain-containing protein | - |
| EL099_RS05855 (NCTC7988_01110) | - | 1132471..1132965 (+) | 495 | WP_024273317.1 | terminase small subunit | - |
| EL099_RS05860 (NCTC7988_01111) | - | 1132968..1134263 (+) | 1296 | WP_069993745.1 | PBSX family phage terminase large subunit | - |
| EL099_RS05865 (NCTC7988_01112) | - | 1134274..1135809 (+) | 1536 | WP_126525406.1 | phage portal protein | - |
| EL099_RS05870 (NCTC7988_01113) | - | 1135816..1136811 (+) | 996 | WP_069993747.1 | minor capsid protein | - |
| EL099_RS05875 (NCTC7988_01114) | - | 1136884..1137054 (+) | 171 | WP_000072207.1 | hypothetical protein | - |
| EL099_RS14965 | - | 1137082..1137169 (+) | 88 | Protein_1108 | hypothetical protein | - |
| EL099_RS05880 (NCTC7988_01115) | - | 1137163..1137783 (+) | 621 | WP_069993748.1 | DUF4355 domain-containing protein | - |
| EL099_RS05885 (NCTC7988_01116) | - | 1137797..1138771 (+) | 975 | WP_069993749.1 | phage major capsid protein | - |
| EL099_RS05890 (NCTC7988_01117) | - | 1138793..1139080 (+) | 288 | WP_031786118.1 | hypothetical protein | - |
| EL099_RS05895 (NCTC7988_01118) | - | 1139089..1139421 (+) | 333 | WP_061735286.1 | phage head-tail connector protein | - |
| EL099_RS05900 (NCTC7988_01119) | - | 1139418..1139720 (+) | 303 | WP_061735285.1 | hypothetical protein | - |
| EL099_RS05905 (NCTC7988_01120) | - | 1139720..1140067 (+) | 348 | WP_001017820.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| EL099_RS05910 (NCTC7988_01121) | - | 1140079..1140462 (+) | 384 | WP_000188647.1 | hypothetical protein | - |
| EL099_RS05915 (NCTC7988_01122) | - | 1140480..1141061 (+) | 582 | WP_069993750.1 | phage major tail protein, TP901-1 family | - |
| EL099_RS05920 (NCTC7988_01123) | - | 1141123..1141488 (+) | 366 | WP_001100161.1 | tail assembly chaperone | - |
| EL099_RS05925 (NCTC7988_01124) | - | 1141518..1141862 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| EL099_RS05930 (NCTC7988_01125) | - | 1141879..1145346 (+) | 3468 | WP_126525408.1 | hypothetical protein | - |
| EL099_RS05935 (NCTC7988_01126) | - | 1145359..1146306 (+) | 948 | WP_065315642.1 | phage tail family protein | - |
| EL099_RS05940 (NCTC7988_01127) | - | 1146315..1148216 (+) | 1902 | WP_065315643.1 | SGNH/GDSL hydrolase family protein | - |
| EL099_RS05945 (NCTC7988_01128) | - | 1148231..1150141 (+) | 1911 | WP_069993752.1 | hypothetical protein | - |
| EL099_RS05950 (NCTC7988_01129) | - | 1150141..1151964 (+) | 1824 | WP_126509061.1 | phage baseplate upper protein | - |
| EL099_RS05955 (NCTC7988_01130) | - | 1151964..1152341 (+) | 378 | WP_065315646.1 | DUF2977 domain-containing protein | - |
| EL099_RS05960 (NCTC7988_01131) | - | 1152351..1152524 (+) | 174 | WP_078098837.1 | XkdX family protein | - |
| EL099_RS05965 (NCTC7988_01132) | - | 1152564..1152869 (+) | 306 | WP_000467322.1 | DUF2951 family protein | - |
| EL099_RS05970 (NCTC7988_01133) | - | 1153006..1154910 (+) | 1905 | WP_069993754.1 | glucosaminidase domain-containing protein | - |
| EL099_RS14970 | - | 1154923..1155534 (+) | 612 | Protein_1128 | BppU family phage baseplate upper protein | - |
| EL099_RS05980 (NCTC7988_01135) | - | 1156986..1157423 (+) | 438 | WP_126509059.1 | phage holin | - |
| EL099_RS05985 (NCTC7988_01136) | - | 1157404..1158849 (+) | 1446 | WP_126509058.1 | SH3 domain-containing protein | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 15606.24 Da Isoelectric Point: 7.0171
>NTDB_id=1119700 EL099_RS05745 WP_000934796.1 1123588..1124007(+) (ssbA) [Staphylococcus aureus strain NCTC7988]
MLNRVVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYDNKEGRRVFVTEVVADSVQFLEPKNNNKQNNQQHNGQTQTGNNPFDNTEEDFSDLPF
MLNRVVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYDNKEGRRVFVTEVVADSVQFLEPKNNNKQNNQQHNGQTQTGNNPFDNTEEDFSDLPF
Nucleotide
Download Length: 420 bp
>NTDB_id=1119700 EL099_RS05745 WP_000934796.1 1123588..1124007(+) (ssbA) [Staphylococcus aureus strain NCTC7988]
ATGTTAAACAGAGTAGTTTTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGTACACCAAATGGCGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTTACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCGTTGGCAGGTGTAGACGGACGACTACAAACACGC
AGTTACGATAACAAAGAAGGGCGACGTGTATTTGTGACAGAAGTAGTAGCGGACAGCGTTCAATTCTTAGAACCGAAGAA
TAACAACAAACAGAATAACCAACAACACAACGGACAAACTCAAACTGGTAATAATCCGTTCGACAATACCGAAGAAGACT
TTTCTGACTTACCGTTCTGA
ATGTTAAACAGAGTAGTTTTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGTACACCAAATGGCGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTTACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCGTTGGCAGGTGTAGACGGACGACTACAAACACGC
AGTTACGATAACAAAGAAGGGCGACGTGTATTTGTGACAGAAGTAGTAGCGGACAGCGTTCAATTCTTAGAACCGAAGAA
TAACAACAAACAGAATAACCAACAACACAACGGACAAACTCAAACTGGTAATAATCCGTTCGACAATACCGAAGAAGACT
TTTCTGACTTACCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
80.374 |
76.978 |
0.619 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.947 |
100 |
0.59 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.091 |
79.137 |
0.468 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.288 |
100 |
0.403 |
| ssbA | Streptococcus mutans UA159 |
45.378 |
85.612 |
0.388 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
49.057 |
76.259 |
0.374 |