Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EL081_RS02150 Genome accession   NZ_LR134266
Coordinates   384300..386285 (+) Length   661 a.a.
NCBI ID   WP_126403803.1    Uniprot ID   -
Organism   Streptococcus viridans strain NCTC3166     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 379300..391285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL081_RS02135 (NCTC3166_00428) - 380101..380673 (+) 573 WP_126403800.1 hypothetical protein -
  EL081_RS02140 (NCTC3166_00429) pbp3 380739..381980 (-) 1242 WP_126403801.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  EL081_RS02145 (NCTC3166_00430) amiA3 382155..384119 (+) 1965 WP_126403802.1 peptide ABC transporter substrate-binding protein Regulator
  EL081_RS02150 (NCTC3166_00431) amiA3 384300..386285 (+) 1986 WP_126403803.1 peptide ABC transporter substrate-binding protein Regulator
  EL081_RS02155 (NCTC3166_00432) amiC 386350..387849 (+) 1500 WP_126403804.1 ABC transporter permease Regulator
  EL081_RS02160 (NCTC3166_00433) amiD 387849..388775 (+) 927 WP_048692005.1 oligopeptide ABC transporter permease OppC Regulator
  EL081_RS02165 (NCTC3166_00434) amiE 388787..389854 (+) 1068 WP_126403805.1 ABC transporter ATP-binding protein Regulator
  EL081_RS02170 (NCTC3166_00435) amiF 389864..390787 (+) 924 WP_048714745.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 72981.00 Da        Isoelectric Point: 5.0004

>NTDB_id=1119556 EL081_RS02150 WP_126403803.1 384300..386285(+) (amiA3) [Streptococcus viridans strain NCTC3166]
MKKSKVFAFAGVTLLAATFLAACSGSKDSKSASKKDTTYGYVYTDDPTTLDYTVSSKASVHDITTNGVDGLLENDKYGNL
VPSIAEDWSVSKDGLTYTYKIRKGVKWYDADGEEHGEVTAHDFVTGLKHAADKKSESLPLVKDSIKGLKDYSEGKISDFS
EVGVKAVDDYTLEYTLNQPETFWNSKTTNGVLFPISTEFLKSKGDEFGQPGNVKSILFNGPFLLKSITSKSEITFEKNED
YWDKDNVHIDKIKFSYYDGSDQDSLARGFSDGSYTVARLFPASSNFASVEKKYKDNIYNTQPGAGVAVFGFNIDRQAYNH
TSKTSDDQKSSTKKAILNKNFRQAITFALNRENYSAQVNGKEYAKAAIRNMYTAPAFVQVNGKDFGDVVADKLQTYGDQW
SGVNLADGQNGLYSKEKAKAQFEKAKAELQKEGVQFPIHLDVPVAQNSTNFVSRMQSFKQSVEETLGTENVVVDLQMMDQ
DEVLNITLNVPSAAETDWDLQGLVGWNPDYDDPSTYLDTLQPSSPDQTKTYLGFAGGVDNASAKAVGLDEFAKLLDDAEK
ETQDVVTRYNKFAAAQAWLTDSALVIPTMTSSGAGTVVSKVVPFSGPSSQTGNKGSTYFKYVEVQDEPVTKKQYDQAREK
WLKEKADSNKKAQQELEKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=1119556 EL081_RS02150 WP_126403803.1 384300..386285(+) (amiA3) [Streptococcus viridans strain NCTC3166]
ATGAAAAAAAGTAAAGTTTTTGCATTTGCCGGAGTAACATTACTCGCAGCAACTTTCCTTGCAGCATGTTCTGGCTCAAA
AGATAGCAAGTCTGCATCAAAAAAAGATACAACATATGGCTATGTTTATACAGATGATCCAACAACTTTGGATTACACTG
TATCTTCAAAAGCTTCCGTACACGATATTACAACAAACGGTGTAGATGGTTTGTTGGAAAACGACAAATACGGAAACCTT
GTACCATCTATTGCTGAAGATTGGTCTGTTTCAAAAGACGGTTTGACTTATACTTACAAAATCCGTAAGGGTGTTAAATG
GTATGATGCTGACGGCGAAGAGCATGGTGAAGTAACAGCACATGACTTTGTTACTGGATTGAAGCATGCGGCAGACAAGA
AATCAGAATCTCTTCCATTGGTGAAAGACTCAATCAAAGGATTGAAAGACTACTCAGAAGGAAAAATTTCAGACTTCTCT
GAGGTTGGGGTCAAAGCAGTAGATGATTATACGCTTGAATACACCTTGAATCAACCAGAAACTTTCTGGAATTCAAAAAC
AACTAATGGGGTTCTTTTCCCAATTAGTACAGAATTCTTGAAGAGCAAGGGTGATGAATTTGGTCAACCAGGTAATGTCA
AATCAATCTTGTTCAATGGTCCATTCCTTTTGAAATCAATCACTTCTAAATCAGAAATCACTTTTGAGAAGAACGAAGAT
TACTGGGATAAAGACAACGTTCATATCGACAAGATCAAATTCTCTTATTATGATGGATCAGATCAAGATTCATTGGCGCG
TGGCTTTAGTGATGGATCGTACACAGTTGCTCGTCTCTTCCCAGCAAGTTCAAACTTTGCGTCTGTTGAAAAGAAATACA
AAGACAATATCTACAACACACAACCTGGAGCTGGTGTAGCAGTCTTTGGTTTCAACATTGACCGTCAAGCATACAACCAT
ACTTCTAAGACGTCAGATGATCAGAAATCTTCTACTAAGAAAGCGATCTTAAACAAGAATTTCCGTCAAGCGATCACATT
TGCCTTGAACCGCGAAAATTATTCAGCGCAAGTCAATGGTAAAGAATACGCTAAGGCTGCTATTCGAAACATGTACACTG
CACCTGCCTTTGTTCAAGTAAACGGTAAAGACTTTGGGGATGTAGTAGCAGACAAGTTGCAAACATATGGAGATCAATGG
AGCGGTGTGAATCTTGCAGACGGTCAAAACGGCCTCTATAGCAAGGAAAAAGCAAAAGCTCAATTTGAAAAAGCAAAAGC
TGAACTCCAAAAAGAAGGTGTTCAATTCCCAATCCACTTGGATGTTCCAGTTGCACAAAACTCAACAAACTTTGTGTCAC
GGATGCAATCCTTCAAACAATCAGTTGAAGAAACACTTGGTACAGAAAACGTTGTTGTGGACCTTCAAATGATGGACCAA
GATGAAGTCTTGAACATTACATTGAACGTACCATCAGCTGCAGAAACTGACTGGGATCTTCAAGGGCTTGTAGGATGGAA
TCCAGACTACGATGATCCATCTACTTACCTTGACACCTTGCAACCATCTTCACCAGACCAAACTAAGACTTACCTTGGAT
TTGCTGGTGGTGTCGATAATGCTTCTGCTAAAGCAGTCGGTTTAGATGAATTTGCGAAATTGCTTGATGATGCAGAAAAA
GAAACGCAAGATGTAGTGACTCGTTACAACAAATTTGCAGCAGCTCAAGCTTGGTTAACAGATAGTGCATTAGTGATTCC
AACTATGACAAGTTCAGGTGCTGGAACAGTTGTTTCAAAAGTAGTTCCATTCTCTGGACCTTCATCACAAACAGGTAACA
AAGGATCAACTTATTTCAAATATGTTGAAGTTCAAGATGAACCTGTCACTAAAAAACAATATGATCAAGCACGTGAAAAA
TGGTTGAAAGAAAAAGCTGATTCAAATAAAAAAGCTCAGCAAGAACTAGAAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(80-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.276

100

0.595
  amiA3 Streptococcus thermophilus LMG 18311

58.824

100

0.59
  amiA Streptococcus salivarius strain HSISS4

58.308

100

0.584

Multiple sequence alignment