Detailed information NTG1119560

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: EL081_RS02170
• Genome accession: NZ_LR134266
• Coordinates: 389864..390787 (+)
• Length: 307 a.a.
• NCBI ID: WP_048714745.1
• Uniprot ID: A0A7X2VKX0
• Organism: Streptococcus viridans strain NCTC3166
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 384864..395787

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL081_RS02155 (NCTC3166_00432)	amiC	386350..387849 (+)	1500	WP_126403804.1	ABC transporter permease	Regulator
EL081_RS02160 (NCTC3166_00433)	amiD	387849..388775 (+)	927	WP_048692005.1	oligopeptide ABC transporter permease OppC	Regulator
EL081_RS02165 (NCTC3166_00434)	amiE	388787..389854 (+)	1068	WP_126403805.1	ABC transporter ATP-binding protein	Regulator
EL081_RS02170 (NCTC3166_00435)	amiF	389864..390787 (+)	924	WP_048714745.1	ATP-binding cassette domain-containing protein	Regulator

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34851.97 Da
• Isoelectric Point: 6.1185

>NTDB_id=1119560 EL081_RS02170 WP_048714745.1 389864..390787(+) (amiF) [Streptococcus viridans strain NCTC3166]
MTEKLIEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSAGDILYDGKKINGKQSRK
DENELIRKIQMIFQDPAASLNERATVDYIISEGLYNYHLFENEEDRVRKVKEIMHEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMEPEFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDPDQHDYSTDKPEMVEIKPGHYVWANKAEQKKYKELV

Nucleotide

• Length: 924 bp

>NTDB_id=1119560 EL081_RS02170 WP_048714745.1 389864..390787(+) (amiF) [Streptococcus viridans strain NCTC3166]
ATGACAGAAAAATTAATAGAAGTTAAAGATCTAGAAATTTCCTTCGGTGAAGGAAGTAAAAAGTTTGTAGCTGTAAAGAA
TGCAAATTTCTTTATCAATAAAGGGGAAACATTTTCCCTTGTTGGTGAGTCTGGTAGTGGGAAGACCACAATTGGTCGAG
CAATCATTGGTTTGAATGACACTAGTGCAGGTGACATTTTATATGATGGCAAAAAAATCAATGGGAAGCAATCTCGCAAG
GATGAAAATGAATTAATCCGAAAAATTCAAATGATCTTCCAAGACCCAGCAGCTAGCTTGAACGAGCGTGCAACAGTTGA
CTACATTATTTCAGAAGGTTTGTACAATTATCACCTATTTGAAAATGAAGAAGACCGAGTGCGTAAAGTAAAAGAAATTA
TGCATGAAGTAGGGCTTCTAGCAGAGCATTTAACTCGCTATCCCCATGAATTCTCTGGTGGACAACGCCAGCGGATTGGG
ATTGCTCGTGCCCTGGTAATGGAACCAGAATTTGTTATCGCAGATGAACCAATTTCTGCCCTAGACGTATCAGTTCGTGC
ACAAGTATTGAATCTCCTGAAGAAATTCCAAAAAGAATTAGGCTTGACCTATCTCTTTATCGCACACGATCTTTCAGTAG
TTCGATTTATCTCTGATCGTATTGCGGTTATTTACAAAGGGGTTATTGTTGAAGTAGCTGAAACGGAAGAATTGTTTAAC
AATCCAATCCATCCTTATACACAATCTCTACTATCTGCAGTTCCAATTCCAGATCCAATCTTAGAACGCAAAAAAGTTCT
GAAAGTTTATGATCCTGATCAGCATGATTATTCAACTGACAAACCAGAAATGGTTGAAATCAAGCCAGGACATTACGTTT
GGGCAAATAAAGCAGAACAGAAAAAATATAAAGAACTTGTATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

• ABC transporter (ABC_tran) (25-178)

3D structure

• AlphaFold DB: A0A7X2VKX0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus salivarius strain HSISS4	84.59	99.349	0.84
amiF	Streptococcus thermophilus LMG 18311	84.262	99.349	0.837
amiF	Streptococcus thermophilus LMD-9	83.934	99.349	0.834