Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   EL081_RS02160 Genome accession   NZ_LR134266
Coordinates   387849..388775 (+) Length   308 a.a.
NCBI ID   WP_048692005.1    Uniprot ID   -
Organism   Streptococcus viridans strain NCTC3166     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 382849..393775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL081_RS02150 (NCTC3166_00431) amiA3 384300..386285 (+) 1986 WP_126403803.1 peptide ABC transporter substrate-binding protein Regulator
  EL081_RS02155 (NCTC3166_00432) amiC 386350..387849 (+) 1500 WP_126403804.1 ABC transporter permease Regulator
  EL081_RS02160 (NCTC3166_00433) amiD 387849..388775 (+) 927 WP_048692005.1 oligopeptide ABC transporter permease OppC Regulator
  EL081_RS02165 (NCTC3166_00434) amiE 388787..389854 (+) 1068 WP_126403805.1 ABC transporter ATP-binding protein Regulator
  EL081_RS02170 (NCTC3166_00435) amiF 389864..390787 (+) 924 WP_048714745.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34538.43 Da        Isoelectric Point: 9.7758

>NTDB_id=1119558 EL081_RS02160 WP_048692005.1 387849..388775(+) (amiD) [Streptococcus viridans strain NCTC3166]
MSTIDKKKFQFVERDDFASETIDAPSYSYWKSVFRQFFKKKSTIFMLAVLVGILLMSFVYPMFSNFDYNDVSKVNDFTAR
LNPPSAKAFFGTDNNGKSLFDGVWFGARNSIIISFIATLINVVIGVVIGGIWGVSKSIDRFMMEVYNVISNVPFMLIVIV
LTYSIGAGFWNLILAMTVTGWIGIAYSIRVQIMRYRDLEYNLASRTLGTPTLKIVTKNILPQLVSVIVTTTTQLLPAFIS
TEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTVLVLVSLSFYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1119558 EL081_RS02160 WP_048692005.1 387849..388775(+) (amiD) [Streptococcus viridans strain NCTC3166]
ATGTCTACAATTGATAAAAAGAAATTCCAATTTGTTGAACGTGACGACTTTGCCTCTGAAACAATTGATGCGCCGTCGTA
CTCCTACTGGAAGTCAGTATTTCGTCAATTTTTTAAAAAGAAATCAACTATTTTCATGTTAGCAGTTTTGGTTGGCATTC
TCTTGATGAGTTTTGTCTATCCAATGTTTTCAAACTTTGATTACAATGATGTAAGTAAAGTAAATGACTTCACTGCTCGT
TTGAATCCTCCAAGTGCCAAGGCCTTCTTCGGTACGGATAACAATGGTAAATCCTTGTTTGATGGAGTTTGGTTTGGTGC
CCGCAATTCGATTATCATCTCCTTTATTGCTACCTTGATCAATGTTGTGATTGGTGTTGTGATTGGTGGGATTTGGGGTG
TATCAAAATCAATCGACCGCTTCATGATGGAAGTTTACAACGTTATTTCAAACGTTCCATTCATGTTAATTGTTATTGTC
TTGACTTACTCAATCGGTGCTGGTTTCTGGAACTTGATTTTGGCGATGACGGTAACAGGATGGATTGGGATTGCTTATTC
TATCCGTGTTCAAATTATGCGTTACCGTGATTTAGAGTACAACTTGGCCAGCCGTACTTTGGGTACTCCAACTCTAAAAA
TCGTGACAAAAAATATCTTGCCACAGTTGGTATCTGTCATTGTGACGACAACTACACAGTTGTTGCCAGCCTTCATTTCA
ACTGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTGCCAATTACAGTTCCAAGTTTAGGTCGTCTGATTTCAGATTACTC
ACAAAACGTAACAACCAATGCGTATCTTTTCTGGATTCCATTGACAGTCTTAGTCTTGGTATCCTTGTCATTCTATATCG
TTGGACAAAACCTTGCAGATGCCAGCGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

77.597

100

0.776
  amiD Streptococcus thermophilus LMG 18311

76.623

100

0.766
  amiD Streptococcus thermophilus LMD-9

76.623

100

0.766

Multiple sequence alignment