Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   EL081_RS02165 Genome accession   NZ_LR134266
Coordinates   388787..389854 (+) Length   355 a.a.
NCBI ID   WP_126403805.1    Uniprot ID   -
Organism   Streptococcus viridans strain NCTC3166     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 383787..394854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL081_RS02150 (NCTC3166_00431) amiA3 384300..386285 (+) 1986 WP_126403803.1 peptide ABC transporter substrate-binding protein Regulator
  EL081_RS02155 (NCTC3166_00432) amiC 386350..387849 (+) 1500 WP_126403804.1 ABC transporter permease Regulator
  EL081_RS02160 (NCTC3166_00433) amiD 387849..388775 (+) 927 WP_048692005.1 oligopeptide ABC transporter permease OppC Regulator
  EL081_RS02165 (NCTC3166_00434) amiE 388787..389854 (+) 1068 WP_126403805.1 ABC transporter ATP-binding protein Regulator
  EL081_RS02170 (NCTC3166_00435) amiF 389864..390787 (+) 924 WP_048714745.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39678.21 Da        Isoelectric Point: 4.6380

>NTDB_id=1119559 EL081_RS02165 WP_126403805.1 388787..389854(+) (amiE) [Streptococcus viridans strain NCTC3166]
MTNDKNVILSARDIVVEFDVRDRVLTAIRNVSLDLVEGEVMALVGESGSGKSVLTKTFTGMLEDNGRIANGTINYRGQEL
TELKSNKDWEDIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKSAKEAREMAIDYMEKVGIPEAERRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQKEYNFTTIFITHDLGVVASIADKVAVMYAGEIVE
FGKVEEIFYDPRHPYTWSLLSSLPQLSTSNGDLYSIPGTPPSLYSPVKGDAFALRSDYAMQIDFEEHPPVFNVSDTHWAK
TWLLHEDAPKVNKPEIIDNLHEKISAKMGFTTIKD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1119559 EL081_RS02165 WP_126403805.1 388787..389854(+) (amiE) [Streptococcus viridans strain NCTC3166]
ATGACAAATGATAAAAATGTAATCTTATCTGCTCGCGATATCGTAGTAGAATTTGATGTTCGGGATCGTGTCTTAACAGC
CATTCGCAATGTGTCCTTAGACCTTGTTGAAGGTGAAGTCATGGCACTTGTTGGTGAATCAGGTTCTGGTAAATCTGTTT
TGACAAAAACCTTCACAGGAATGTTAGAAGACAACGGACGGATAGCCAATGGTACTATTAATTATCGCGGACAAGAATTA
ACAGAACTCAAGTCAAACAAAGATTGGGAAGATATCCGCGGTGCAAAAATTGCAACGATCTTCCAAGATCCGATGACCAG
TTTGGACCCGATTAATACAATTGGATCACAAATTACGGAAGTTATTATTAAACACCAAGGCAAGAGTGCCAAAGAAGCCA
GAGAGATGGCCATTGATTATATGGAAAAGGTTGGAATCCCAGAAGCAGAACGTCGCTTTGATGAATATCCTTTCCAATAT
TCAGGTGGGATGCGCCAACGGATTGTTATTGCTATTGCGCTTGCTTGTCGTCCTGATATCTTGATCTGTGATGAGCCTAC
AACAGCCCTCGACGTAACCATTCAAGCCCAGATCATTGACTTGTTGAAATCATTGCAAAAAGAATATAACTTTACAACAA
TCTTTATCACCCATGATTTAGGTGTGGTGGCAAGTATTGCAGATAAGGTTGCCGTAATGTATGCTGGTGAAATTGTAGAA
TTTGGTAAAGTAGAAGAAATCTTCTATGACCCAAGACATCCTTATACCTGGAGTCTTCTTTCAAGTTTGCCACAGTTGTC
TACATCTAATGGTGATTTATATTCTATCCCAGGTACTCCTCCATCATTGTATTCACCAGTGAAGGGTGATGCCTTTGCAT
TGCGCTCAGACTATGCCATGCAAATTGATTTTGAGGAACACCCACCAGTTTTCAATGTTTCAGATACACATTGGGCTAAA
ACATGGCTCTTGCATGAAGATGCACCAAAAGTCAATAAACCAGAAATTATTGATAATCTGCATGAAAAGATTAGCGCGAA
AATGGGATTCACTACAATCAAGGACTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

83.662

100

0.837
  amiE Streptococcus thermophilus LMG 18311

82.535

100

0.825
  amiE Streptococcus thermophilus LMD-9

82.535

100

0.825
  oppD Streptococcus mutans UA159

56.232

97.183

0.546

Multiple sequence alignment