Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | EL075_RS06120 | Genome accession | NZ_LR134244 |
| Coordinates | 1246641..1246958 (+) | Length | 105 a.a. |
| NCBI ID | WP_002465742.1 | Uniprot ID | - |
| Organism | Staphylococcus warneri strain NCTC7291 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1241641..1251958
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL075_RS06090 (NCTC7291_01255) | - | 1242432..1242635 (+) | 204 | WP_002451885.1 | YqgQ family protein | - |
| EL075_RS06095 (NCTC7291_01256) | - | 1242632..1243618 (+) | 987 | WP_002465775.1 | ROK family glucokinase | - |
| EL075_RS06100 (NCTC7291_01257) | - | 1243618..1243941 (+) | 324 | WP_015364969.1 | MTH1187 family thiamine-binding protein | - |
| EL075_RS06105 (NCTC7291_01258) | - | 1243945..1244568 (+) | 624 | WP_126403173.1 | MBL fold metallo-hydrolase | - |
| EL075_RS06110 (NCTC7291_01259) | comGA | 1244615..1245589 (+) | 975 | WP_002465784.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EL075_RS06115 (NCTC7291_01260) | comGB | 1245561..1246628 (+) | 1068 | WP_002465743.1 | competence type IV pilus assembly protein ComGB | - |
| EL075_RS06120 (NCTC7291_01261) | comGC | 1246641..1246958 (+) | 318 | WP_002465742.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EL075_RS12150 | comGD | 1246936..1247376 (+) | 441 | WP_015364970.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| EL075_RS06130 (NCTC7291_01262) | - | 1247574..1248071 (+) | 498 | WP_002465737.1 | competence type IV pilus minor pilin ComGF | - |
| EL075_RS06140 | - | 1248230..1248748 (+) | 519 | WP_037539765.1 | shikimate kinase | - |
| EL075_RS06145 (NCTC7291_01264) | gcvT | 1248920..1250011 (+) | 1092 | WP_002465750.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| EL075_RS06150 (NCTC7291_01265) | gcvPA | 1250030..1251379 (+) | 1350 | WP_015364973.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11738.79 Da Isoelectric Point: 9.5430
>NTDB_id=1119370 EL075_RS06120 WP_002465742.1 1246641..1246958(+) (comGC) [Staphylococcus warneri strain NCTC7291]
MRKHKYSLKTKAFTLIEMLLVLLIISLLLILIIPNVAKQTAHIQSTGCDAQVKMINSQIEAYTLKHNRNPNTIQDLITEG
YIKENQKSCKTGETISISNGEAIAN
MRKHKYSLKTKAFTLIEMLLVLLIISLLLILIIPNVAKQTAHIQSTGCDAQVKMINSQIEAYTLKHNRNPNTIQDLITEG
YIKENQKSCKTGETISISNGEAIAN
Nucleotide
Download Length: 318 bp
>NTDB_id=1119370 EL075_RS06120 WP_002465742.1 1246641..1246958(+) (comGC) [Staphylococcus warneri strain NCTC7291]
ATGAGAAAACATAAATACTCACTTAAAACTAAAGCTTTCACCTTAATAGAAATGCTTTTAGTATTATTAATCATAAGTTT
ATTACTTATTTTAATTATACCTAATGTCGCCAAACAGACGGCACATATTCAATCAACTGGCTGCGATGCACAAGTTAAAA
TGATAAATAGCCAAATTGAAGCGTATACTTTAAAACATAATAGAAATCCAAATACTATTCAGGATTTAATTACAGAAGGA
TATATTAAAGAGAATCAAAAAAGTTGTAAAACAGGTGAAACAATTTCAATAAGTAATGGCGAAGCGATTGCAAATTAA
ATGAGAAAACATAAATACTCACTTAAAACTAAAGCTTTCACCTTAATAGAAATGCTTTTAGTATTATTAATCATAAGTTT
ATTACTTATTTTAATTATACCTAATGTCGCCAAACAGACGGCACATATTCAATCAACTGGCTGCGATGCACAAGTTAAAA
TGATAAATAGCCAAATTGAAGCGTATACTTTAAAACATAATAGAAATCCAAATACTATTCAGGATTTAATTACAGAAGGA
TATATTAAAGAGAATCAAAAAAGTTGTAAAACAGGTGAAACAATTTCAATAAGTAATGGCGAAGCGATTGCAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
81.188 |
96.19 |
0.781 |
| comGC | Staphylococcus aureus N315 |
81.188 |
96.19 |
0.781 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
43.434 |
94.286 |
0.41 |
| comYC | Streptococcus suis isolate S10 |
50 |
76.19 |
0.381 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
42.553 |
89.524 |
0.381 |