Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   EL075_RS12150 Genome accession   NZ_LR134244
Coordinates   1246936..1247376 (+) Length   146 a.a.
NCBI ID   WP_015364970.1    Uniprot ID   -
Organism   Staphylococcus warneri strain NCTC7291     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1241936..1252376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL075_RS06090 (NCTC7291_01255) - 1242432..1242635 (+) 204 WP_002451885.1 YqgQ family protein -
  EL075_RS06095 (NCTC7291_01256) - 1242632..1243618 (+) 987 WP_002465775.1 ROK family glucokinase -
  EL075_RS06100 (NCTC7291_01257) - 1243618..1243941 (+) 324 WP_015364969.1 MTH1187 family thiamine-binding protein -
  EL075_RS06105 (NCTC7291_01258) - 1243945..1244568 (+) 624 WP_126403173.1 MBL fold metallo-hydrolase -
  EL075_RS06110 (NCTC7291_01259) comGA 1244615..1245589 (+) 975 WP_002465784.1 competence type IV pilus ATPase ComGA Machinery gene
  EL075_RS06115 (NCTC7291_01260) comGB 1245561..1246628 (+) 1068 WP_002465743.1 competence type IV pilus assembly protein ComGB -
  EL075_RS06120 (NCTC7291_01261) comGC 1246641..1246958 (+) 318 WP_002465742.1 competence type IV pilus major pilin ComGC Machinery gene
  EL075_RS12150 comGD 1246936..1247376 (+) 441 WP_015364970.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL075_RS06130 (NCTC7291_01262) - 1247574..1248071 (+) 498 WP_002465737.1 competence type IV pilus minor pilin ComGF -
  EL075_RS06140 - 1248230..1248748 (+) 519 WP_037539765.1 shikimate kinase -
  EL075_RS06145 (NCTC7291_01264) gcvT 1248920..1250011 (+) 1092 WP_002465750.1 glycine cleavage system aminomethyltransferase GcvT -
  EL075_RS06150 (NCTC7291_01265) gcvPA 1250030..1251379 (+) 1350 WP_015364973.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17009.34 Da        Isoelectric Point: 10.5759

>NTDB_id=1119384 EL075_RS12150 WP_015364970.1 1246936..1247376(+) (comGD) [Staphylococcus warneri strain NCTC7291]
MAKRLQIKAYNYIEILMVLFILSILLLCTLSSKNLLTLSMSNDEMNINLLITQLNYIKSKAISEKQSITLMFNHQSSHIN
VKEEHGKKYQIKIKDGKIIKITKINLITFDKNGNVNHFGSLNIKMKHSIYKVIFHIEKGRIRYTKL

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1119384 EL075_RS12150 WP_015364970.1 1246936..1247376(+) (comGD) [Staphylococcus warneri strain NCTC7291]
ATGGCGAAGCGATTGCAAATTAAAGCGTATAATTACATAGAAATATTAATGGTATTATTCATTTTGTCTATACTATTGTT
GTGTACTTTAAGCAGTAAAAATCTTTTAACATTATCAATGTCTAATGATGAAATGAATATTAATCTACTAATAACTCAAT
TGAATTATATAAAATCAAAAGCAATTAGCGAAAAACAATCAATCACTTTAATGTTTAATCATCAATCTTCTCATATAAAT
GTTAAAGAAGAACATGGTAAAAAGTATCAAATAAAAATAAAAGATGGGAAGATCATAAAGATAACGAAAATAAATCTAAT
TACCTTTGATAAAAATGGCAATGTTAATCATTTTGGTTCGTTAAATATAAAAATGAAACATTCAATATACAAAGTCATAT
TTCATATTGAGAAAGGACGAATAAGGTATACCAAACTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

48.993

100

0.5
  comGD Staphylococcus aureus N315

48.993

100

0.5

Multiple sequence alignment