Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | EL075_RS06110 | Genome accession | NZ_LR134244 |
| Coordinates | 1244615..1245589 (+) | Length | 324 a.a. |
| NCBI ID | WP_002465784.1 | Uniprot ID | - |
| Organism | Staphylococcus warneri strain NCTC7291 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1239615..1250589
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL075_RS06075 (NCTC7291_01252) | rpmG | 1240056..1240205 (+) | 150 | WP_002451882.1 | 50S ribosomal protein L33 | - |
| EL075_RS06080 (NCTC7291_01253) | - | 1240437..1240991 (+) | 555 | WP_015364967.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| EL075_RS06085 (NCTC7291_01254) | - | 1240988..1242442 (+) | 1455 | WP_015364968.1 | rhomboid family intramembrane serine protease | - |
| EL075_RS06090 (NCTC7291_01255) | - | 1242432..1242635 (+) | 204 | WP_002451885.1 | YqgQ family protein | - |
| EL075_RS06095 (NCTC7291_01256) | - | 1242632..1243618 (+) | 987 | WP_002465775.1 | ROK family glucokinase | - |
| EL075_RS06100 (NCTC7291_01257) | - | 1243618..1243941 (+) | 324 | WP_015364969.1 | MTH1187 family thiamine-binding protein | - |
| EL075_RS06105 (NCTC7291_01258) | - | 1243945..1244568 (+) | 624 | WP_126403173.1 | MBL fold metallo-hydrolase | - |
| EL075_RS06110 (NCTC7291_01259) | comGA | 1244615..1245589 (+) | 975 | WP_002465784.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EL075_RS06115 (NCTC7291_01260) | comGB | 1245561..1246628 (+) | 1068 | WP_002465743.1 | competence type IV pilus assembly protein ComGB | - |
| EL075_RS06120 (NCTC7291_01261) | comGC | 1246641..1246958 (+) | 318 | WP_002465742.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EL075_RS12150 | comGD | 1246936..1247376 (+) | 441 | WP_015364970.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| EL075_RS06130 (NCTC7291_01262) | - | 1247574..1248071 (+) | 498 | WP_002465737.1 | competence type IV pilus minor pilin ComGF | - |
| EL075_RS06140 | - | 1248230..1248748 (+) | 519 | WP_037539765.1 | shikimate kinase | - |
| EL075_RS06145 (NCTC7291_01264) | gcvT | 1248920..1250011 (+) | 1092 | WP_002465750.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37163.35 Da Isoelectric Point: 9.2695
>NTDB_id=1119369 EL075_RS06110 WP_002465784.1 1244615..1245589(+) (comGA) [Staphylococcus warneri strain NCTC7291]
MKILFQEIINKAIVYKASDVHFIPMEHYVHIKFRVNDTLTSYETLDIGIYRKLLVFMKFQAGLDVSTQQIAQSGRYTYKL
RSVYYLRISTLPLSIGSESCVIRIVPQYFQNKKETYEFNDFKHLMNKKQGLLLFTGPTGSGKSTLMYQMVMYAQKELNLN
VISIEDPVEQILKGITQISVNTKAGITYASSFKAILRCDPDVILIGEIRDAEIAKYVFQASLSGHLVLSTLHANDCKGAL
LRLLEMGITIQELSQAINLISNQRLITTSSQRRQLVCELMFKNQINYFFEHNQTMPRSFKRLSSKLDDMTKEGIICETIA
DKYI
MKILFQEIINKAIVYKASDVHFIPMEHYVHIKFRVNDTLTSYETLDIGIYRKLLVFMKFQAGLDVSTQQIAQSGRYTYKL
RSVYYLRISTLPLSIGSESCVIRIVPQYFQNKKETYEFNDFKHLMNKKQGLLLFTGPTGSGKSTLMYQMVMYAQKELNLN
VISIEDPVEQILKGITQISVNTKAGITYASSFKAILRCDPDVILIGEIRDAEIAKYVFQASLSGHLVLSTLHANDCKGAL
LRLLEMGITIQELSQAINLISNQRLITTSSQRRQLVCELMFKNQINYFFEHNQTMPRSFKRLSSKLDDMTKEGIICETIA
DKYI
Nucleotide
Download Length: 975 bp
>NTDB_id=1119369 EL075_RS06110 WP_002465784.1 1244615..1245589(+) (comGA) [Staphylococcus warneri strain NCTC7291]
TTGAAGATATTATTTCAAGAAATAATTAATAAAGCTATAGTTTATAAAGCAAGTGATGTACATTTTATTCCAATGGAACA
TTATGTTCATATAAAATTCAGAGTGAATGATACTTTAACATCATATGAAACTCTTGATATCGGAATTTATCGTAAATTAC
TTGTTTTTATGAAATTTCAAGCAGGATTGGATGTGTCGACGCAGCAAATCGCTCAAAGTGGTCGTTACACATATAAATTA
AGATCAGTTTATTACTTACGTATTTCAACTCTCCCTTTATCAATCGGTAGTGAAAGTTGTGTAATTAGAATAGTGCCTCA
ATATTTTCAAAATAAAAAGGAAACTTATGAATTTAACGATTTTAAACATTTAATGAATAAGAAACAAGGATTATTGCTTT
TTACGGGACCAACTGGTTCAGGTAAAAGCACACTCATGTATCAAATGGTTATGTACGCGCAAAAAGAATTGAATCTCAAT
GTCATATCTATCGAAGACCCCGTAGAACAAATTTTAAAAGGTATTACTCAAATCTCAGTGAATACTAAAGCCGGTATTAC
TTATGCAAGTTCATTTAAAGCCATACTTCGGTGCGATCCAGATGTTATTTTGATTGGAGAAATCAGAGACGCTGAAATAG
CAAAATATGTGTTTCAAGCAAGCTTGAGTGGCCATTTAGTATTAAGTACATTACATGCTAATGATTGCAAAGGGGCATTG
TTAAGATTATTAGAGATGGGTATTACGATTCAAGAACTATCACAAGCTATCAATTTAATATCTAACCAACGTTTAATAAC
CACTTCAAGCCAACGACGCCAATTAGTTTGTGAACTTATGTTCAAAAATCAAATCAATTACTTTTTTGAACATAATCAAA
CAATGCCTAGATCTTTTAAGCGACTATCTTCAAAACTAGATGATATGACTAAAGAGGGAATTATATGTGAAACAATTGCT
GATAAATATATTTAA
TTGAAGATATTATTTCAAGAAATAATTAATAAAGCTATAGTTTATAAAGCAAGTGATGTACATTTTATTCCAATGGAACA
TTATGTTCATATAAAATTCAGAGTGAATGATACTTTAACATCATATGAAACTCTTGATATCGGAATTTATCGTAAATTAC
TTGTTTTTATGAAATTTCAAGCAGGATTGGATGTGTCGACGCAGCAAATCGCTCAAAGTGGTCGTTACACATATAAATTA
AGATCAGTTTATTACTTACGTATTTCAACTCTCCCTTTATCAATCGGTAGTGAAAGTTGTGTAATTAGAATAGTGCCTCA
ATATTTTCAAAATAAAAAGGAAACTTATGAATTTAACGATTTTAAACATTTAATGAATAAGAAACAAGGATTATTGCTTT
TTACGGGACCAACTGGTTCAGGTAAAAGCACACTCATGTATCAAATGGTTATGTACGCGCAAAAAGAATTGAATCTCAAT
GTCATATCTATCGAAGACCCCGTAGAACAAATTTTAAAAGGTATTACTCAAATCTCAGTGAATACTAAAGCCGGTATTAC
TTATGCAAGTTCATTTAAAGCCATACTTCGGTGCGATCCAGATGTTATTTTGATTGGAGAAATCAGAGACGCTGAAATAG
CAAAATATGTGTTTCAAGCAAGCTTGAGTGGCCATTTAGTATTAAGTACATTACATGCTAATGATTGCAAAGGGGCATTG
TTAAGATTATTAGAGATGGGTATTACGATTCAAGAACTATCACAAGCTATCAATTTAATATCTAACCAACGTTTAATAAC
CACTTCAAGCCAACGACGCCAATTAGTTTGTGAACTTATGTTCAAAAATCAAATCAATTACTTTTTTGAACATAATCAAA
CAATGCCTAGATCTTTTAAGCGACTATCTTCAAAACTAGATGATATGACTAAAGAGGGAATTATATGTGAAACAATTGCT
GATAAATATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
74.383 |
100 |
0.744 |
| comGA | Staphylococcus aureus N315 |
74.383 |
100 |
0.744 |