Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | EL068_RS06295 | Genome accession | NZ_LR134242 |
| Coordinates | 1280072..1280389 (+) | Length | 105 a.a. |
| NCBI ID | WP_002465742.1 | Uniprot ID | - |
| Organism | Staphylococcus warneri strain NCTC4133 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1275072..1285389
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL068_RS06265 (NCTC4133_01280) | - | 1275863..1276066 (+) | 204 | WP_002451885.1 | YqgQ family protein | - |
| EL068_RS06270 (NCTC4133_01281) | - | 1276063..1277049 (+) | 987 | WP_002465775.1 | ROK family glucokinase | - |
| EL068_RS06275 (NCTC4133_01282) | - | 1277049..1277372 (+) | 324 | WP_015364969.1 | MTH1187 family thiamine-binding protein | - |
| EL068_RS06280 (NCTC4133_01283) | - | 1277376..1277999 (+) | 624 | WP_002465751.1 | MBL fold metallo-hydrolase | - |
| EL068_RS06285 (NCTC4133_01284) | comGA | 1278046..1279020 (+) | 975 | WP_126510334.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EL068_RS06290 (NCTC4133_01285) | comGB | 1278992..1280059 (+) | 1068 | WP_107529356.1 | competence type IV pilus assembly protein ComGB | - |
| EL068_RS06295 (NCTC4133_01286) | comGC | 1280072..1280389 (+) | 318 | WP_002465742.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EL068_RS11810 (NCTC4133_01287) | comGD | 1280367..1280807 (+) | 441 | WP_126510335.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| EL068_RS06305 (NCTC4133_01288) | - | 1281005..1281502 (+) | 498 | WP_071561238.1 | competence type IV pilus minor pilin ComGF | - |
| EL068_RS06315 | - | 1281661..1282179 (+) | 519 | WP_071561236.1 | shikimate kinase | - |
| EL068_RS06320 (NCTC4133_01290) | gcvT | 1282351..1283442 (+) | 1092 | WP_058710166.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| EL068_RS06325 (NCTC4133_01291) | gcvPA | 1283461..1284810 (+) | 1350 | WP_126510336.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11738.79 Da Isoelectric Point: 9.5430
>NTDB_id=1119335 EL068_RS06295 WP_002465742.1 1280072..1280389(+) (comGC) [Staphylococcus warneri strain NCTC4133]
MRKHKYSLKTKAFTLIEMLLVLLIISLLLILIIPNVAKQTAHIQSTGCDAQVKMINSQIEAYTLKHNRNPNTIQDLITEG
YIKENQKSCKTGETISISNGEAIAN
MRKHKYSLKTKAFTLIEMLLVLLIISLLLILIIPNVAKQTAHIQSTGCDAQVKMINSQIEAYTLKHNRNPNTIQDLITEG
YIKENQKSCKTGETISISNGEAIAN
Nucleotide
Download Length: 318 bp
>NTDB_id=1119335 EL068_RS06295 WP_002465742.1 1280072..1280389(+) (comGC) [Staphylococcus warneri strain NCTC4133]
ATGAGAAAACATAAATACTCACTTAAAACTAAAGCTTTCACCTTAATAGAAATGCTTTTAGTATTATTAATCATAAGTTT
ATTACTTATTTTAATTATACCTAATGTCGCCAAACAGACGGCACATATTCAATCAACTGGATGCGATGCACAAGTTAAAA
TGATAAATAGCCAAATTGAAGCGTATACTTTAAAACATAATAGAAATCCAAATACTATTCAGGATTTAATTACAGAAGGA
TATATTAAAGAGAATCAAAAAAGTTGTAAAACAGGTGAAACAATTTCAATAAGTAATGGCGAAGCGATTGCAAATTAA
ATGAGAAAACATAAATACTCACTTAAAACTAAAGCTTTCACCTTAATAGAAATGCTTTTAGTATTATTAATCATAAGTTT
ATTACTTATTTTAATTATACCTAATGTCGCCAAACAGACGGCACATATTCAATCAACTGGATGCGATGCACAAGTTAAAA
TGATAAATAGCCAAATTGAAGCGTATACTTTAAAACATAATAGAAATCCAAATACTATTCAGGATTTAATTACAGAAGGA
TATATTAAAGAGAATCAAAAAAGTTGTAAAACAGGTGAAACAATTTCAATAAGTAATGGCGAAGCGATTGCAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
81.188 |
96.19 |
0.781 |
| comGC | Staphylococcus aureus N315 |
81.188 |
96.19 |
0.781 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
43.434 |
94.286 |
0.41 |
| comYC | Streptococcus suis isolate S10 |
50 |
76.19 |
0.381 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
42.553 |
89.524 |
0.381 |