Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   EL068_RS11810 Genome accession   NZ_LR134242
Coordinates   1280367..1280807 (+) Length   146 a.a.
NCBI ID   WP_126510335.1    Uniprot ID   -
Organism   Staphylococcus warneri strain NCTC4133     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1275367..1285807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL068_RS06265 (NCTC4133_01280) - 1275863..1276066 (+) 204 WP_002451885.1 YqgQ family protein -
  EL068_RS06270 (NCTC4133_01281) - 1276063..1277049 (+) 987 WP_002465775.1 ROK family glucokinase -
  EL068_RS06275 (NCTC4133_01282) - 1277049..1277372 (+) 324 WP_015364969.1 MTH1187 family thiamine-binding protein -
  EL068_RS06280 (NCTC4133_01283) - 1277376..1277999 (+) 624 WP_002465751.1 MBL fold metallo-hydrolase -
  EL068_RS06285 (NCTC4133_01284) comGA 1278046..1279020 (+) 975 WP_126510334.1 competence type IV pilus ATPase ComGA Machinery gene
  EL068_RS06290 (NCTC4133_01285) comGB 1278992..1280059 (+) 1068 WP_107529356.1 competence type IV pilus assembly protein ComGB -
  EL068_RS06295 (NCTC4133_01286) comGC 1280072..1280389 (+) 318 WP_002465742.1 competence type IV pilus major pilin ComGC Machinery gene
  EL068_RS11810 (NCTC4133_01287) comGD 1280367..1280807 (+) 441 WP_126510335.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL068_RS06305 (NCTC4133_01288) - 1281005..1281502 (+) 498 WP_071561238.1 competence type IV pilus minor pilin ComGF -
  EL068_RS06315 - 1281661..1282179 (+) 519 WP_071561236.1 shikimate kinase -
  EL068_RS06320 (NCTC4133_01290) gcvT 1282351..1283442 (+) 1092 WP_058710166.1 glycine cleavage system aminomethyltransferase GcvT -
  EL068_RS06325 (NCTC4133_01291) gcvPA 1283461..1284810 (+) 1350 WP_126510336.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17059.35 Da        Isoelectric Point: 10.5492

>NTDB_id=1119349 EL068_RS11810 WP_126510335.1 1280367..1280807(+) (comGD) [Staphylococcus warneri strain NCTC4133]
MAKRLQIKEYNYIEMLMVLFILSILLLCTLSSKNLLTISKSNDEMNINLLITQLNYIKSKAISEKQSITLMFNHQSSHIN
VKEENGKKYQIKIKDGKIIKITKINLITFDKNGNVNHFGSLNIKMKHSIYKVIFHIEKGRIRYTKL

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1119349 EL068_RS11810 WP_126510335.1 1280367..1280807(+) (comGD) [Staphylococcus warneri strain NCTC4133]
ATGGCGAAGCGATTGCAAATTAAAGAGTATAATTACATAGAAATGTTAATGGTATTATTCATTTTGTCTATACTATTGTT
GTGTACTTTAAGCAGTAAAAATCTTTTAACAATATCAAAATCTAATGATGAAATGAATATTAATCTACTAATAACTCAAT
TGAATTATATAAAATCAAAAGCAATTAGCGAAAAACAATCAATCACTTTAATGTTTAATCATCAATCTTCTCATATAAAT
GTTAAAGAAGAAAATGGTAAAAAGTATCAAATAAAAATAAAAGATGGGAAGATCATAAAGATAACGAAAATAAATCTAAT
TACCTTTGATAAAAACGGCAATGTTAATCATTTTGGTTCGTTAAATATAAAAATGAAACATTCAATATACAAAGTCATAT
TTCATATTGAGAAAGGACGAATAAGGTATACCAAACTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

48.993

100

0.5
  comGD Staphylococcus aureus N315

48.993

100

0.5

Multiple sequence alignment