Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | EL068_RS06285 | Genome accession | NZ_LR134242 |
| Coordinates | 1278046..1279020 (+) | Length | 324 a.a. |
| NCBI ID | WP_126510334.1 | Uniprot ID | - |
| Organism | Staphylococcus warneri strain NCTC4133 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1273046..1284020
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL068_RS06250 (NCTC4133_01277) | rpmG | 1273487..1273636 (+) | 150 | WP_002451882.1 | 50S ribosomal protein L33 | - |
| EL068_RS06255 (NCTC4133_01278) | - | 1273868..1274422 (+) | 555 | WP_058710070.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| EL068_RS06260 (NCTC4133_01279) | - | 1274419..1275873 (+) | 1455 | WP_126510333.1 | rhomboid family protein | - |
| EL068_RS06265 (NCTC4133_01280) | - | 1275863..1276066 (+) | 204 | WP_002451885.1 | YqgQ family protein | - |
| EL068_RS06270 (NCTC4133_01281) | - | 1276063..1277049 (+) | 987 | WP_002465775.1 | ROK family glucokinase | - |
| EL068_RS06275 (NCTC4133_01282) | - | 1277049..1277372 (+) | 324 | WP_015364969.1 | MTH1187 family thiamine-binding protein | - |
| EL068_RS06280 (NCTC4133_01283) | - | 1277376..1277999 (+) | 624 | WP_002465751.1 | MBL fold metallo-hydrolase | - |
| EL068_RS06285 (NCTC4133_01284) | comGA | 1278046..1279020 (+) | 975 | WP_126510334.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EL068_RS06290 (NCTC4133_01285) | comGB | 1278992..1280059 (+) | 1068 | WP_107529356.1 | competence type IV pilus assembly protein ComGB | - |
| EL068_RS06295 (NCTC4133_01286) | comGC | 1280072..1280389 (+) | 318 | WP_002465742.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EL068_RS11810 (NCTC4133_01287) | comGD | 1280367..1280807 (+) | 441 | WP_126510335.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| EL068_RS06305 (NCTC4133_01288) | - | 1281005..1281502 (+) | 498 | WP_071561238.1 | competence type IV pilus minor pilin ComGF | - |
| EL068_RS06315 | - | 1281661..1282179 (+) | 519 | WP_071561236.1 | shikimate kinase | - |
| EL068_RS06320 (NCTC4133_01290) | gcvT | 1282351..1283442 (+) | 1092 | WP_058710166.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37162.41 Da Isoelectric Point: 9.5054
>NTDB_id=1119334 EL068_RS06285 WP_126510334.1 1278046..1279020(+) (comGA) [Staphylococcus warneri strain NCTC4133]
MKILFQEIINKAIVYKASDVHFIPMEHYVHIKFRVNDTLTSYETLDIGIYRKLLVFMKFQAGLDVSTQQIAQSGRYTYKL
RSVYYLRISTLPLSIGSESCVIRIVPQYFQNKKETYEFNDFKHLMNKKQGLLLFTGPTGSGKSTLMYQMVMYAQKKLNLN
VISIEDPVEQILKGITQISVNTKAGITYASSFKAILRCDPDVILIGEIRDAEIAKYVFQASLSGHLVLSTLHANDCKGAL
LRLLEMGITIQELSQAINLISNQRLITTSSQRRQLVCELMFKNQINYFFEHNQTMPRSFKRLSSKLDDMTKEGIICETIA
DKYI
MKILFQEIINKAIVYKASDVHFIPMEHYVHIKFRVNDTLTSYETLDIGIYRKLLVFMKFQAGLDVSTQQIAQSGRYTYKL
RSVYYLRISTLPLSIGSESCVIRIVPQYFQNKKETYEFNDFKHLMNKKQGLLLFTGPTGSGKSTLMYQMVMYAQKKLNLN
VISIEDPVEQILKGITQISVNTKAGITYASSFKAILRCDPDVILIGEIRDAEIAKYVFQASLSGHLVLSTLHANDCKGAL
LRLLEMGITIQELSQAINLISNQRLITTSSQRRQLVCELMFKNQINYFFEHNQTMPRSFKRLSSKLDDMTKEGIICETIA
DKYI
Nucleotide
Download Length: 975 bp
>NTDB_id=1119334 EL068_RS06285 WP_126510334.1 1278046..1279020(+) (comGA) [Staphylococcus warneri strain NCTC4133]
TTGAAGATATTATTTCAAGAAATAATTAATAAAGCTATAGTTTATAAAGCAAGTGATGTACATTTTATTCCAATGGAACA
TTATGTTCATATAAAATTCAGAGTGAATGATACTTTAACATCATATGAAACTCTTGATATCGGAATTTATCGTAAATTAC
TTGTTTTTATGAAATTTCAAGCAGGATTGGATGTGTCGACGCAGCAAATCGCTCAAAGTGGTCGTTACACATATAAATTA
AGATCAGTTTATTACTTACGTATTTCAACTCTCCCTTTATCAATCGGTAGTGAAAGTTGTGTAATTAGAATAGTGCCTCA
ATATTTTCAAAATAAAAAGGAAACTTATGAATTTAACGATTTTAAACATTTAATGAACAAGAAACAAGGATTATTGCTTT
TTACAGGACCAACTGGTTCAGGTAAAAGCACACTCATGTATCAAATGGTTATGTACGCGCAAAAAAAATTGAATCTCAAT
GTCATATCTATCGAAGACCCCGTAGAACAAATTTTAAAAGGTATTACTCAAATCTCAGTGAATACTAAAGCCGGTATTAC
TTATGCAAGTTCATTTAAAGCCATACTTCGGTGCGATCCAGATGTTATTTTGATTGGAGAAATCAGAGACGCTGAAATAG
CAAAATATGTGTTTCAAGCAAGCTTGAGTGGCCATTTAGTATTAAGTACATTACATGCTAATGATTGCAAAGGGGCGTTG
TTAAGATTATTAGAGATGGGTATTACGATTCAAGAACTATCACAAGCTATCAATTTAATATCTAACCAACGTTTAATAAC
CACTTCAAGCCAACGACGTCAATTAGTTTGTGAACTTATGTTCAAAAATCAAATCAATTACTTTTTTGAACATAATCAAA
CAATGCCTAGATCTTTTAAGCGATTATCTTCAAAACTAGATGATATGACTAAAGAGGGAATTATATGTGAAACAATTGCT
GATAAATATATTTAA
TTGAAGATATTATTTCAAGAAATAATTAATAAAGCTATAGTTTATAAAGCAAGTGATGTACATTTTATTCCAATGGAACA
TTATGTTCATATAAAATTCAGAGTGAATGATACTTTAACATCATATGAAACTCTTGATATCGGAATTTATCGTAAATTAC
TTGTTTTTATGAAATTTCAAGCAGGATTGGATGTGTCGACGCAGCAAATCGCTCAAAGTGGTCGTTACACATATAAATTA
AGATCAGTTTATTACTTACGTATTTCAACTCTCCCTTTATCAATCGGTAGTGAAAGTTGTGTAATTAGAATAGTGCCTCA
ATATTTTCAAAATAAAAAGGAAACTTATGAATTTAACGATTTTAAACATTTAATGAACAAGAAACAAGGATTATTGCTTT
TTACAGGACCAACTGGTTCAGGTAAAAGCACACTCATGTATCAAATGGTTATGTACGCGCAAAAAAAATTGAATCTCAAT
GTCATATCTATCGAAGACCCCGTAGAACAAATTTTAAAAGGTATTACTCAAATCTCAGTGAATACTAAAGCCGGTATTAC
TTATGCAAGTTCATTTAAAGCCATACTTCGGTGCGATCCAGATGTTATTTTGATTGGAGAAATCAGAGACGCTGAAATAG
CAAAATATGTGTTTCAAGCAAGCTTGAGTGGCCATTTAGTATTAAGTACATTACATGCTAATGATTGCAAAGGGGCGTTG
TTAAGATTATTAGAGATGGGTATTACGATTCAAGAACTATCACAAGCTATCAATTTAATATCTAACCAACGTTTAATAAC
CACTTCAAGCCAACGACGTCAATTAGTTTGTGAACTTATGTTCAAAAATCAAATCAATTACTTTTTTGAACATAATCAAA
CAATGCCTAGATCTTTTAAGCGATTATCTTCAAAACTAGATGATATGACTAAAGAGGGAATTATATGTGAAACAATTGCT
GATAAATATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
74.383 |
100 |
0.744 |
| comGA | Staphylococcus aureus N315 |
74.383 |
100 |
0.744 |