Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ELZ47_RS02105 Genome accession   NZ_LR134002
Coordinates   419392..421362 (+) Length   656 a.a.
NCBI ID   WP_126435155.1    Uniprot ID   A0AAJ5NM25
Organism   Streptococcus sanguinis strain NCTC 10904     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 414392..426362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ47_RS02095 (NCTC10904_00416) pbp3 415680..416948 (-) 1269 WP_126435151.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ELZ47_RS02100 (NCTC10904_00417) amiA 417244..419199 (+) 1956 WP_164549538.1 peptide ABC transporter substrate-binding protein Regulator
  ELZ47_RS02105 (NCTC10904_00418) amiA3 419392..421362 (+) 1971 WP_126435155.1 peptide ABC transporter substrate-binding protein Regulator
  ELZ47_RS02115 (NCTC10904_00419) amiA 421596..423572 (+) 1977 WP_125332710.1 peptide ABC transporter substrate-binding protein Regulator
  ELZ47_RS02120 (NCTC10904_00420) amiC 423637..425133 (+) 1497 WP_125332708.1 ABC transporter permease Regulator
  ELZ47_RS02125 (NCTC10904_00421) amiD 425133..426059 (+) 927 WP_072074535.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72599.10 Da        Isoelectric Point: 4.4974

>NTDB_id=1117798 ELZ47_RS02105 WP_126435155.1 419392..421362(+) (amiA3) [Streptococcus sanguinis strain NCTC 10904]
MKTSKLAAAAGLVILSAGILAACSFGGSNSSGKNYSYVYTADPDTLDYTVSNKRATNEIMANVVDGLLESDKYGNLVPSL
AEDWTVSKDGLTYTYKLREGVKWYTSDGEEYADVTAKDFVTSLKHAADSKSDGLYIVQKSIKGLDDYVNGKITDFSQVGV
KAVDDSTVQYTLNQPESFWNSKTTMGILFPINEEFLKSKGDKFAQGTDPTSVLYNGPFILKSITSKSQISLEKNPNYWDK
EKVKIDTVKFSYYDGQDTESLVRGFSDGNYTIARLFPNSSNFASVKKQYGDNIVYTPQGSGTFVVTTNIDRQSYEHTSKT
TDAQKSSTKKALLNKDFRQALLFAFDRTAYSAQTNGEEAADKQLRNTFVPPTFVQANGKEFGSIVEENLASYGDEWKGVK
LDDAQDGLYNPEKAKAEFAKAKEALQAEGVEFPIHLDIPVSSADTNGVKSVQSLKQSIESNLGSDNVVIDIQQMTDDELN
NITYFANSASQEDWDLNNNLGWSPDYNDPSSYLEITGSKTGENVDSYFGFDPGTDNAAAKEAGFEEYDKLLEDAASENED
INKRYEKYAAAQAWLTDSALLMPAWSSGATPSVRKVVPFSGPFAWTGNKGEYSFKYVEIQDKPITTKEYEKAREKWAKEK
EESNKKAQEELAEHIK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1117798 ELZ47_RS02105 WP_126435155.1 419392..421362(+) (amiA3) [Streptococcus sanguinis strain NCTC 10904]
ATGAAAACATCTAAGTTAGCTGCAGCTGCTGGGCTTGTCATTCTCTCTGCAGGAATTTTGGCTGCCTGTTCGTTTGGCGG
CTCTAATTCATCTGGGAAAAACTATAGCTATGTTTATACCGCAGATCCAGATACGTTGGATTACACTGTGTCCAATAAGC
GGGCAACCAATGAGATAATGGCTAATGTAGTAGATGGTTTGCTGGAAAGCGATAAGTATGGTAACTTAGTGCCTTCTCTA
GCGGAAGATTGGACTGTTTCAAAAGATGGTCTGACTTATACTTATAAGCTTCGTGAGGGAGTGAAATGGTATACTTCTGA
TGGTGAAGAGTATGCAGATGTGACTGCTAAGGACTTTGTGACCAGTCTGAAGCATGCCGCAGACAGCAAGTCTGATGGTC
TCTATATCGTTCAAAAATCCATTAAAGGCTTGGACGATTATGTCAATGGTAAAATAACTGATTTCTCTCAAGTGGGTGTC
AAGGCGGTGGATGATTCTACTGTTCAATACACTTTGAATCAGCCAGAAAGTTTCTGGAATTCTAAGACAACCATGGGGAT
TCTTTTCCCAATTAATGAAGAATTTCTGAAATCAAAAGGTGACAAGTTTGCTCAGGGAACGGATCCAACCAGTGTCCTCT
ATAACGGTCCGTTTATCTTGAAATCTATCACTTCGAAATCTCAAATTAGCTTAGAGAAGAATCCAAACTATTGGGATAAG
GAAAAGGTAAAAATTGACACTGTCAAATTCTCTTACTATGATGGTCAAGATACAGAATCTCTGGTGCGTGGCTTTTCTGA
TGGCAACTACACCATTGCTCGTCTTTTCCCAAATAGTTCCAACTTTGCCAGTGTGAAGAAACAGTATGGCGATAATATCG
TCTACACTCCTCAAGGTTCAGGAACCTTCGTTGTCACAACTAATATCGACCGTCAGTCTTACGAGCATACTTCTAAGACA
ACGGATGCACAGAAATCTTCCACTAAGAAAGCACTGCTCAATAAAGATTTCCGGCAGGCTCTGCTTTTTGCCTTTGACCG
TACTGCTTATTCTGCACAAACCAATGGCGAAGAAGCAGCAGACAAGCAGCTTCGTAATACCTTTGTTCCGCCAACCTTTG
TACAAGCTAATGGTAAAGAGTTCGGCAGCATTGTAGAAGAAAATCTAGCTAGCTACGGTGATGAGTGGAAGGGAGTCAAA
TTAGACGACGCTCAGGATGGCCTTTATAATCCGGAGAAAGCCAAGGCAGAATTTGCCAAAGCTAAGGAAGCGCTGCAGGC
AGAAGGGGTAGAATTCCCTATTCATCTGGATATTCCGGTCAGCTCAGCAGATACCAATGGCGTTAAGAGTGTTCAGTCAC
TGAAGCAGTCTATTGAATCCAATCTTGGTTCTGACAATGTGGTGATTGATATTCAGCAGATGACAGATGATGAGTTGAAT
AACATCACCTACTTTGCGAACTCTGCCTCTCAAGAAGACTGGGACTTGAATAATAATCTCGGCTGGAGCCCAGATTATAA
CGATCCATCTTCTTATCTGGAAATCACTGGCTCTAAGACTGGTGAGAATGTTGACAGCTACTTTGGTTTTGACCCTGGAA
CAGATAATGCAGCAGCTAAAGAGGCCGGCTTTGAAGAGTATGACAAGCTCTTGGAGGACGCTGCTTCAGAAAACGAGGAT
ATTAACAAACGTTACGAAAAGTATGCTGCAGCTCAGGCTTGGCTGACAGACAGTGCCCTGTTGATGCCGGCATGGTCATC
TGGTGCAACACCAAGTGTCCGTAAGGTTGTTCCGTTCTCAGGACCATTTGCTTGGACTGGAAACAAGGGTGAATACAGCT
TTAAATATGTTGAAATCCAAGATAAACCAATAACGACTAAAGAATATGAAAAAGCGCGTGAAAAATGGGCAAAGGAAAAG
GAAGAATCCAACAAAAAAGCTCAAGAAGAACTCGCAGAACATATCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.788

100

0.601
  amiA3 Streptococcus thermophilus LMG 18311

59.029

100

0.593
  amiA Streptococcus salivarius strain HSISS4

58.815

100

0.59

Multiple sequence alignment